 Entry |
| Summary |
| Database / ID | EM DATA BANK (EMDB) / 1819 |
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| Authors | daFonseca PCA, Kong EH, Zhang Z, Schreiber A, Williams MA, Morris EP, Barford D |
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| EMDB Sites |  EMDB @PDBe (EU), EMDB @RCSB (USA) |
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| Structure Visualization |
| Movies |  Movie Page
#1: Surface view with section colored by density value, Surface level: 0.121, Made by UCSF CHIMERA #2: Surface view colored by radius, Surface level: 0.121, Made by UCSF CHIMERA |
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| Supplemental images |
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| Structure viewers |  Yorodumi,  Launch PeppeR (About PeppeR), Volume viewer (RCSB, PDBe) |
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| Related Structure Data |
| Related Entries |
Cite: data citing same article |
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| Similar strucutres (beta) |
 List of similar structure data  about Omokage system |
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 Article |
| Citation - Primary |
| Article | Nature, Vol. 470, Issue 7333, Page 274-8, Year 2011 |
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| Title | Structures of APC/C(Cdh1) with substrates identify Cdh1 and Apc10 as the D-box co-receptor. |
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| Authors | Paula C A da Fonseca, Eric H Kong, Ziguo Zhang, Anne Schreiber, Mark A Williams, Edward P Morris, David Barford
Section of Structural Biology, Institute of Cancer Research, Chester Beatty Laboratories, 237 Fulham Road, London SW3 6JB, UK. |
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| Keywords |  Amino Acid Motifs, Biocatalysis, Cell Cycle Proteins (chemistry), Cryoelectron Microscopy, DOC1 protein, S cerevisiae, Hct1 protein, S cerevisiae, Models, Molecular, Nuclear Magnetic Resonance, Biomolecular, Peptides (chemistry), Protein Binding, Protein Conformation, Saccharomyces cerevisiae (chemistry), Saccharomyces cerevisiae Proteins (chemistry), Substrate Specificity, Ubiquitin-Protein Ligase Complexes (chemistry, 6.3.2.19), Ubiquitination, anaphase-promoting complex (6.3.2.19) |
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| Links | DOI: 10.1038/nature09625, PubMed: 21107322, PMC: PMC3037847 |
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 Map |
| File |  EMD-1819.map ( map file in CCP4 format, 10978 KB ) |
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| Projections & Slices | Size of images: | Axes |  Y (Sec.) |  X (Row.) |  Z (Col.) |
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| Surface |  |  |  |
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Projections |  |  |  |
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Slices (1/3) |  |  |  |
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Slices (1/2) |  |  |  |
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Slices (2/3) |  |  |  |
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Images are generated by Spider package. |
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| Density |
| Contour Level: | 0.121 (by emdb), 0.121 (movie #1): |
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| Minimum - Maximum: | -0.42908561 - 0.63115054 |
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| Average (Standard dev.): | 0.00175390 (0.02725418) |
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|
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| Data Type | Image stored as Reals |
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| Space Group Number | 1 |
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| Map Geometry | | Axis Order : | Z | X | Y |
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| Dimensions : | 140 | 140 | 140 |
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| Origin : | -70 | -70 | -70 |
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| Limit : | 69 | 69 | 69 |
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| Spacing : | 140 | 140 | 140 |
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|
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| Unit Cell | A = 485.80002 A , B = 485.80002 A , C = 485.80002 A ,
alpha = 90.0 degrees , beta = 90.0 degrees , gamma = 90.0 degrees |
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| Pixel Spacing | X = 3.47 A , Y = 3.47 A , Z = 3.47 A |
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| CCP4 map header info | | mode | Image stored as Reals |
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| A/pix X/Y/Z | 3.47 | 3.47 | 3.47 |
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| M x/y/z | 140 | 140 | 140 |
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| origin x/y/z | 0.000 | 0.000 | 0.000 |
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| length x/y/z | 485.800 | 485.800 | 485.800 |
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| alpha/beta/gamma | 90.000 | 90.000 | 90.000 |
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| start NX/NY/NZ | -70 | -70 | -70 |
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| NX/NY/NZ | 140 | 140 | 140 |
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| MAP C/R/S | 3 | 1 | 2 |
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| start NC/NR/NS | -70 | -70 | -70 |
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| NC/NR/NS | 140 | 140 | 140 |
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| start NC,NX/NR,NY/NS,NZ | | | |
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| NC,NX/NR,NY/NS,NZ | | | |
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| D min/max/mean | -0.429 | 0.631 | 0.002 |
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| Annotation Details | Structure of S. cerevisiae anaphase promoting complex-Cdh1 bound to a Hsl1 fragment |
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