 Entry |
| Summary |
| Database / ID | EM DATA BANK (EMDB) / 1678 |
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| Authors | Lundqvist J, Elmlund H, Peterson-Wulff R, Elmlund D, Emanuelsson C, Hebert H, Willows R, Hansson M, Lindahl M, Al-Karadaghi S |
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| EMDB Sites |  EMDB @PDBe (EU), EMDB @RCSB (USA) |
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| Structure Visualization |
| Movies |  Movie Page
#1: Surface view with section colored by density value, Surface level: 0.005, Made by UCSF CHIMERA #2: Surface view colored by cylindrical radius, Surface level: 0.005, Made by UCSF CHIMERA |
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| Supplemental images |
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| Structure viewers |  Yorodumi,  Launch PeppeR (About PeppeR), Volume viewer (RCSB, PDBe) |
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| Related Structure Data |
| Related Entries |
Cite: data citing same article Fit: output model of fitting |
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| Similar strucutres (beta) |
 List of similar structure data  about Omokage system |
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 Article |
| Citation - Primary |
| Article | Structure, Vol. 18, Issue 3, Page 354-65, Year 2010 |
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| Title | ATP-induced conformational dynamics in the AAA+ motor unit of magnesium chelatase. |
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| Authors | Joakim Lundqvist, Hans Elmlund, Ragna Peterson Wulff, Lisa Berglund, Dominika Elmlund, Cecilia Emanuelsson, Hans Hebert, Robert D Willows, Mats Hansson, Martin Lindahl, Salam Al-Karadaghi
Department of Molecular Biophysics, Centre for Molecular Protein Science, Lund University, Lund, Sweden. |
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| Keywords |  Adenosine Triphosphate (chemistry, 56-65-5), Amino Acid Sequence, Bacterial Proteins (chemistry), Cryoelectron Microscopy, Genes, Bacterial, Lyases (chemistry, 4.-), Models, Molecular, Molecular Sequence Data, Protein Conformation, Rhodobacter capsulatus (metabolism), magnesium chelatase (4.99.1-) |
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| Links | PII: S0969-2126(10)00031-6, DOI: 10.1016/j.str.2010.01.001, PubMed: 20223218 |
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 Map |
| File |  EMD-1678.map ( map file in CCP4 format, 2050 KB ) |
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| Projections & Slices | Size of images: | Axes |  Z (Sec.) |  Y (Row.) |  X (Col.) |
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| Surface |  |  |  |
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Projections |  |  |  |
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Slices (1/3) |  |  |  |
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Slices (1/2) |  |  |  |
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Slices (2/3) |  |  |  |
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Images are generated by Spider package. |
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| Density |
| Contour Level: | 0.005 (by author), 0.005 (movie #1): |
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| Minimum - Maximum: | -0.0280966 - 0.0773895 |
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| Average (Standard dev.): | 0.000822421 (0.00452024) |
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|
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| Data Type | Image stored as Reals |
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| Space Group Number | 1 |
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| Map Geometry | | Axis Order : | X | Y | Z |
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| Dimensions : | 80 | 80 | 80 |
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| Origin : | -40 | -40 | -40 |
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| Limit : | 39 | 39 | 39 |
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| Spacing : | 80 | 80 | 80 |
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|
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| Unit Cell | A = 186.4 A , B = 186.4 A , C = 186.4 A ,
alpha = 90 degrees , beta = 90 degrees , gamma = 90 degrees |
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| Pixel Spacing | X = 2.33 A , Y = 2.33 A , Z = 2.33 A |
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| CCP4 map header info | | mode | Image stored as Reals |
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| A/pix X/Y/Z | 2.33 | 2.33 | 2.33 |
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| M x/y/z | 80 | 80 | 80 |
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| origin x/y/z | 0.000 | 0.000 | 0.000 |
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| length x/y/z | 186.400 | 186.400 | 186.400 |
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| alpha/beta/gamma | 90.000 | 90.000 | 90.000 |
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| start NX/NY/NZ | 0 | 0 | 0 |
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| NX/NY/NZ | 121 | 121 | 121 |
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| MAP C/R/S | 1 | 2 | 3 |
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| start NC/NR/NS | -40 | -40 | -40 |
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| NC/NR/NS | 80 | 80 | 80 |
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| start NC,NX/NR,NY/NS,NZ | | | |
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| NC,NX/NR,NY/NS,NZ | | | |
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| D min/max/mean | -0.028 | 0.077 | 0.001 |
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| Annotation Details | CryoEM 3D reconstruction of Rhodobacter capsulatus Mg-chelatase BchID complex in the presence of AMPPNP |
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