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Open data
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Basic information
Entry | Database: EMDB / ID: EMD-0871 | |||||||||
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Title | Cryo-EM structure of echovirus 11 empty particle at pH 5.5 | |||||||||
![]() | Cryo-EM structure of echovirus 11 empty particle at pH 5.5 | |||||||||
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Function / homology | ![]() symbiont-mediated suppression of host cytoplasmic pattern recognition receptor signaling pathway via inhibition of RIG-I activity / ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() Similarity search - Function | |||||||||
Biological species | ![]() ![]() | |||||||||
Method | ![]() ![]() | |||||||||
![]() | Liu S / Gao FG | |||||||||
![]() | ![]() Title: Molecular and structural basis of Echovirus 11 infection by using the dual-receptor system of CD55 and FcRn. Authors: Niu S / Liu C / Liu C / Liu S / Song Y / Zhang Y / Tian W / Zhao X / Wang P / Gao FG | |||||||||
History |
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Structure visualization
Movie |
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Structure viewer | EM map: ![]() ![]() ![]() |
Supplemental images |
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Downloads & links
-EMDB archive
Map data | ![]() | 198 MB | ![]() | |
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Header (meta data) | ![]() ![]() | 10.3 KB 10.3 KB | Display Display | ![]() |
FSC (resolution estimation) | ![]() | 13.5 KB | Display | ![]() |
Images | ![]() | 308.6 KB | ||
Filedesc metadata | ![]() | 4.9 KB | ||
Archive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 6lbqMC ![]() 0854C ![]() 0855C ![]() 0856C ![]() 0857C ![]() 0858C ![]() 0859C ![]() 0860C ![]() 0867C ![]() 0870C ![]() 6la3C ![]() 6la4C ![]() 6la5C ![]() 6la6C ![]() 6la7C ![]() 6laoC ![]() 6lapC ![]() 6lb1C ![]() 6lboC M: atomic model generated by this map C: citing same article ( |
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Similar structure data |
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Links
EMDB pages | ![]() ![]() |
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Related items in Molecule of the Month |
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Map
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Annotation | Cryo-EM structure of echovirus 11 empty particle at pH 5.5 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Voxel size | X=Y=Z: 1.09 Å | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Density |
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Symmetry | Space group: 1 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Details | EMDB XML:
CCP4 map header:
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-Supplemental data
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Sample components
-Entire : Echovirus E11
Entire | Name: ![]() ![]() |
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Components |
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-Supramolecule #1: Echovirus E11
Supramolecule | Name: Echovirus E11 / type: virus / ID: 1 / Parent: 0 / Macromolecule list: all / NCBI-ID: 12078 / Sci species name: Echovirus E11 / Virus type: VIRION / Virus isolate: STRAIN / Virus enveloped: No / Virus empty: No |
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-Macromolecule #1: Capsid protein VP1
Macromolecule | Name: Capsid protein VP1 / type: protein_or_peptide / ID: 1 / Number of copies: 1 / Enantiomer: LEVO |
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Source (natural) | Organism: ![]() ![]() |
Molecular weight | Theoretical: 26.048557 KDa |
Sequence | String: SESSIENFLC RSACVYMGEY HTTNTDTSKL FASWTINARR MVQMRRKLEL FTYVRFDMEV TFVITSKQDQ GTQLGQDMPP LTHQIMYIP PGGPIPKSVT DYTWQTSTNP SIFWTEGNAP PRMSIPFISI GNAYSNFYDG WSHFSQNGVY GYNTLNHMGQ I YVRHVNGS ...String: SESSIENFLC RSACVYMGEY HTTNTDTSKL FASWTINARR MVQMRRKLEL FTYVRFDMEV TFVITSKQDQ GTQLGQDMPP LTHQIMYIP PGGPIPKSVT DYTWQTSTNP SIFWTEGNAP PRMSIPFISI GNAYSNFYDG WSHFSQNGVY GYNTLNHMGQ I YVRHVNGS SPLPMTSTVR MYFKPKHVKV WVPRPPRLCQ YKNASTVNFT PTNITEKRQS INYIPETV |
-Macromolecule #2: Capsid protein VP2
Macromolecule | Name: Capsid protein VP2 / type: protein_or_peptide / ID: 2 / Number of copies: 1 / Enantiomer: LEVO |
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Source (natural) | Organism: ![]() ![]() |
Molecular weight | Theoretical: 27.367783 KDa |
Sequence | String: RVRSITLGNS TITTQESANV VVAYGRWPEY LKDNEATAED QPTQPDVATC RFYTLESVTW ERDSPGWWWK FPDALKDMGL FGQNMYYHY LGRAGYTIHV QCNASKFHQG CLMVVCVPEA EMGCSQVDGT VNEHSLSEGE TAKKFASTST NGTNTVQSIV T NAGMGVGV ...String: RVRSITLGNS TITTQESANV VVAYGRWPEY LKDNEATAED QPTQPDVATC RFYTLESVTW ERDSPGWWWK FPDALKDMGL FGQNMYYHY LGRAGYTIHV QCNASKFHQG CLMVVCVPEA EMGCSQVDGT VNEHSLSEGE TAKKFASTST NGTNTVQSIV T NAGMGVGV GNLTIFPHQW INLRTNNCAT IVMPYINNVP MDNMFRHHNF TLMIIPFVPL DYSSDSSTYV PITVTVAPMC AE YNGLR |
-Macromolecule #3: Capsid protein VP3
Macromolecule | Name: Capsid protein VP3 / type: protein_or_peptide / ID: 3 / Number of copies: 1 / Enantiomer: LEVO |
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Source (natural) | Organism: ![]() ![]() |
Molecular weight | Theoretical: 25.29273 KDa |
Sequence | String: GLPVMNTPGS NQFLTSDDFQ SPSAMPQFDV TPELNIPGEV QNLMEIAEVD SVVPVNNVEG KLDTMEIYRI PVQSGNHQSS QVFGFQVQP GLDNVFKHTL LGEILNYYAH WSGSIKLTFV FCGSAMATGK FLLAYAPPGA NAPKSRKDAM LGTHIIWDVG L QSSCVLCI ...String: GLPVMNTPGS NQFLTSDDFQ SPSAMPQFDV TPELNIPGEV QNLMEIAEVD SVVPVNNVEG KLDTMEIYRI PVQSGNHQSS QVFGFQVQP GLDNVFKHTL LGEILNYYAH WSGSIKLTFV FCGSAMATGK FLLAYAPPGA NAPKSRKDAM LGTHIIWDVG L QSSCVLCI PWISQTHYRL VQQDEYTSAG NVTCWYQTGI VVPAGTPTSC SIMCFVSACN DFSVRLLKDT PFI |
-Experimental details
-Structure determination
Method | ![]() |
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Aggregation state | particle |
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Sample preparation
Buffer | pH: 5.5 |
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Vitrification | Cryogen name: ETHANE |
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Electron microscopy
Microscope | FEI TITAN KRIOS |
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Electron beam | Acceleration voltage: 300 kV / Electron source: ![]() |
Electron optics | Illumination mode: FLOOD BEAM / Imaging mode: BRIGHT FIELD![]() |
Image recording | Film or detector model: FEI FALCON III (4k x 4k) / Average electron dose: 1.025 e/Å2 |
Experimental equipment | ![]() Model: Titan Krios / Image courtesy: FEI Company |