New EM Navigator & Yorodumi

• In 15th Sep 2016, the development versions of EM Navigator and Yorodumi will replace the official versions.
• Current version will continue as 'legacy version' for some time.

Related info.:Changes in new EM Navigator and Yorodumi / EM Navigator / Yorodumi

Changes in new versions of EM Navigator and Yorodumi. (Sep. 2016)

• Changes:
• New user interface unified in EM Navigator, Yorodumi & Omokage search, supporting mobile devices as well as PCs.
• New Yorodumi replace the individual data page ("Detail page" of EM Navigator in the legacy system). It is unified browser for EMDB, PDB, and SASBDB entries integrated with EM Navigator and Omokage search.
• The viewers (structure/movie viewers) appear in pop-up windows. On a PC, multiple viewer windows can be opened. On mobile devices, the viewers support touch operation.
• New features:
• Molmil, molecular structure viewer, and SurfView, surface model viewer for EMDB map data, are available to view the 3D structures. Both viewers support mobile device use.
• Yorodumi support SASBDB entries.
• Some new pages such as Yorodumi Papers, citation database of structure data entries and Yorodumi Search, cross search by keywords

Related info.:EM Navigator / Yorodumi / SurfView / Molmil / Movie viewer / EMN Papers / Yorodumi Papers / Yorodumi Search / Aug 31, 2016. New EM Navigator & Yorodumi

3D electron microscopy data browser

URL: https://pdbj.org/emnavi/.

• EM Navigator is a browser for 3D electron microscopy (3D-EM) data of biological molecules and assemblies.
• It provides EMDB-PDB cross-search, statistical information, and links to similar structures.
• You can easily check the latest EM structural data and structural papers.

Related info.:EMDB / PDB / PDBj / Q: What are the data sources of EM Navigator? / EMN Search / EMN Papers / EMN Gallery / EMN Statistics / Changes in new EM Navigator and Yorodumi

Thousand views of thousand structures

URL: https://pdbj.org/emnavi/quick.php

• Yorodumi is a browser for structure data from EMDB, PDB, SASBDB, etc.
• This page is also the successor to EM Navigator detail page, and also detail information page/front-end page for Omokage search.
• The word "yorodu" (or yorozu) is an old Japanese word meaning "ten thousand". "mi" (miru) is to see.

Related info.:EMDB / PDB / SASBDB / Comparison of 3 databanks / Yorodumi Search / Aug 31, 2016. New EM Navigator & Yorodumi / Yorodumi Papers / Jmol/JSmol / Function and homology information / Changes in new EM Navigator and Yorodumi