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1O5T
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CRYSTAL STRUCTURE OF THE AMINOACYLATION CATALYTIC FRAGMENT OF HUMAN TRYPTOPHANYL-TRNA SYNTHETASE
Descriptor:Tryptophanyl-tRNA synthetase(E.C.6.1.1.2)
Authors:Yu, Y., Liu, Y., Shen, N., Xu, X., Jia, J., Jin, Y., Arnold, E., Ding, J.
Deposit date:2003-10-05
Release date:2004-07-06
Modification date:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal Structure of Human Tryptophanyl-tRNA Synthetase Catalytic Fragment
J.BIOL.CHEM., 279, 2004
3IPM
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CRYSTAL STRUCTURE OF ARCHAEAL 20S PROTEASOME IN COMPLEX WITH THE C-TERMINUS OF PAN
Descriptor:Proteasome subunit alpha (E.C.3.4.25.1), Proteasome subunit beta (E.C.3.4.25.1), Proteasome activator protein PA26/Proteasome-activating nucleotidase fusion protein
Authors:Yu, Y., Cheng, Y.
Deposit date:2009-08-17
Release date:2009-12-29
Modification date:2010-08-11
Method:X-RAY DIFFRACTION (4 Å)
Cite:Interactions of PAN's C-termini with archaeal 20S proteasome and implications for the eukaryotic proteasome-ATPase interactions.
Embo J., 29, 2010
4HK4
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CRYSTAL STRUCTURE OF APO TYROSINE-TRNA LIGASE MUTANT PROTEIN
Descriptor:Tyrosine--tRNA ligase (E.C.6.1.1.1)
Authors:Yu, Y., Zhou, Q., Dong, J., Li, J., Xiaoxuan, L., Mukherjee, A., Ouyang, H., Nilges, M., Li, H., Gao, F., Gong, W., Lu, Y., Wang, J.
Deposit date:2012-10-15
Release date:2013-04-17
Modification date:2015-05-27
Method:X-RAY DIFFRACTION (2.298 Å)
Cite:Crystal structure of apo Tyrosine-tRNA ligase mutant protein
To be Published
4HPW
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CRYSTAL STRUCTURE OF TYROSINE-TRNA LIGASE MUTANT COMPLEXED WITH UNNATURAL AMINO ACID 3-O-METHYL-TYROSINE
Descriptor:Tyrosine--tRNA ligase (E.C.6.1.1.1)
Authors:Yu, Y., Zhou, Q., Dong, J., Li, J., Xiaoxuan, L., Mukherjee, A., Ouyang, H., Nilges, M., Li, H., Gao, F., Gong, W., Lu, Y., Wang, J.
Deposit date:2012-10-24
Release date:2013-10-30
Modification date:2015-05-27
Method:X-RAY DIFFRACTION (1.998 Å)
Cite:Crystal structure of Tyrosine-tRNA ligase mutant complexed with unnatural amino acid 3-o-methyl-Tyrosine
To be Published
1XTQ
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STRUCTURE OF SMALL GTPASE HUMAN RHEB IN COMPLEX WITH GDP
Descriptor:GTP-binding protein Rheb
Authors:Yu, Y., Ding, J.
Deposit date:2004-10-24
Release date:2005-03-08
Modification date:2009-02-24
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural Basis for the Unique Biological Function of Small GTPase RHEB
J.Biol.Chem., 280, 2005
1XTR
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STRUCTURE OF SMALL GTPASE HUMAN RHEB IN COMPLEX WITH GPPNHP
Descriptor:GTP-binding protein Rheb
Authors:Yu, Y., Ding, J.
Deposit date:2004-10-24
Release date:2005-03-08
Modification date:2011-07-13
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Structural Basis for the Unique Biological Function of Small GTPase RHEB
J.Biol.Chem., 280, 2005
1XTS
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STRUCTURE OF SMALL GTPASE HUMAN RHEB IN COMPLEX WITH GTP
Descriptor:GTP-binding protein Rheb
Authors:Yu, Y., Ding, J.
Deposit date:2004-10-24
Release date:2005-03-08
Modification date:2009-02-24
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural Basis for the Unique Biological Function of Small GTPase RHEB
J.Biol.Chem., 280, 2005
4M58
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CRYSTAL STRUCTURE OF AN TRANSITION METAL TRANSPORTER
Descriptor:Cobalamin biosynthesis protein CbiM
Authors:Yu, Y., Yan, C.Y., Zhang, B., Li, X.L., Gu, J.K.
Deposit date:2013-08-08
Release date:2014-03-26
Method:X-RAY DIFFRACTION (3.21 Å)
Cite:Planar substrate-binding site dictates the specificity of ECF-type nickel/cobalt transporters
Cell Res., 24, 2014
4M5B
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CRYSTAL STRUCTURE OF AN TRUNCATED TRANSITION METAL TRANSPORTER
Descriptor:Cobalamin biosynthesis protein CbiM
Authors:Yu, Y.
Deposit date:2013-08-08
Release date:2014-03-26
Method:X-RAY DIFFRACTION (1.833 Å)
Cite:Planar substrate-binding site dictates the specificity of ECF-type nickel/cobalt transporters
Cell Res., 24, 2014
4M5C
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CRYSTAL STRUCTURE OF AN TRUNCATED TRANSITION METAL TRANSPORTER
Descriptor:Cobalamin biosynthesis protein CbiM
Authors:Yu, Y., Zhou, M.Z., Gu, J.K.
Deposit date:2013-08-08
Release date:2014-03-26
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Planar substrate-binding site dictates the specificity of ECF-type nickel/cobalt transporters
Cell Res., 24, 2014
2G3F
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CRYSTAL STRUCTURE OF IMIDAZOLONEPROPIONASE COMPLEXED WITH IMIDAZOLE-4-ACETIC ACID SODIUM SALT, A SUBSTRATE HOMOLOGUE
Descriptor:Imidazolonepropionase (E.C.3.5.2.7)
Authors:Yu, Y., Liang, Y.H., Su, X.D.
Deposit date:2006-02-19
Release date:2006-09-26
Modification date:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:A catalytic mechanism revealed by the crystal structures of the imidazolonepropionase from Bacillus subtilis
J.Biol.Chem., 281, 2006
3HRN
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CRYSTAL STRUCTURE OF A C-TERMINAL COILED COIL DOMAIN OF TRANSIENT RECEPTOR POTENTIAL (TRP) CHANNEL SUBFAMILY P MEMBER 2 (TRPP2, POLYCYSTIC KIDNEY DISEASE 2)
Descriptor:Polycystin-2
Authors:Yu, Y., Ulbrich, M.H., Li, M.-H., Buraei, Z., Chen, X.-Z., Ong, A.C.M., Tong, L., Isacoff, E.Y., Yang, J.
Deposit date:2009-06-09
Release date:2009-07-28
Modification date:2009-09-08
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural and molecular basis of the assembly of the TRPP2/PKD1 complex.
Proc.Natl.Acad.Sci.USA, 106, 2009
3HRO
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CRYSTAL STRUCTURE OF A C-TERMINAL COILED COIL DOMAIN OF TRANSIENT RECEPTOR POTENTIAL (TRP) CHANNEL SUBFAMILY P MEMBER 2 (TRPP2, POLYCYSTIC KIDNEY DISEASE 2)
Descriptor:Polycystin-2
Authors:Yu, Y., Ulbrich, M.H., Li, M.-H., Buraei, Z., Chen, X.-Z., Ong, A.C.M., Tong, L., Isacoff, E.Y., Yang, J.
Deposit date:2009-06-09
Release date:2009-07-28
Modification date:2009-09-08
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural and molecular basis of the assembly of the TRPP2/PKD1 complex.
Proc.Natl.Acad.Sci.USA, 106, 2009
3V4P
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CRYSTAL STRUCTURE OF A4B7 HEADPIECE COMPLEXED WITH FAB ACT-1
Descriptor:Integrin alpha-4, Integrin beta-7, heavy chain, light chain
Authors:Yu, Y., Zhu, J., Springer, T.A.
Deposit date:2011-12-15
Release date:2012-01-11
Modification date:2012-03-28
Method:X-RAY DIFFRACTION (3.15 Å)
Cite:Structural specializations of a4b7, an Integrin that Mediates Rolling Adhesion
J.Cell Biol., 196, 2012
3V4V
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CRYSTAL STRUCTURE OF A4B7 HEADPIECE COMPLEXED WITH FAB ACT-1 AND RO0505376
Descriptor:Integrin alpha-4, Integrin beta-7, heavy chain, light chain
Authors:Yu, Y., Zhu, J., Springer, T.A.
Deposit date:2011-12-15
Release date:2012-01-11
Modification date:2012-03-28
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Structural specializations of a4b7, an Integrin that Mediates Rolling Adhesion
J.Cell Biol., 196, 2012
4B2H
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COMPLEXES OF DODECIN WITH FLAVIN AND FLAVIN-LIKE LIGANDS
Descriptor:DODECIN
Authors:Yu, Y., Heidel, B., Parapugna, T.L., Wenderhold-Reeb, S., Song, B., Schoenherr, H., Grininger, M., Noell, G.
Deposit date:2012-07-16
Release date:2013-05-29
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:The Flavoprotein Dodecin as a Redox Probe for Electron Transfer Through DNA.
Angew.Chem.Int.Ed.Engl., 52, 2013
4GIF
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C-TERMINAL COILED-COIL DOMAIN OF TRANSIENT RECEPTOR POTENTIAL CHANNEL TRPP3 (PKD2L1, POLYCYSTIN-L)
Descriptor:Polycystic kidney disease 2-like 1 protein
Authors:Yu, Y., Ulbrich, M.H., Li, M.-H., Dobbins, S., Zhang, W.K., Tong, L., Isacoff, E.Y., Yang, J.
Deposit date:2012-08-08
Release date:2012-12-05
Modification date:2012-12-26
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Molecular mechanism of the assembly of an acid-sensing receptor ion channel complex.
Nat Commun, 3, 2012
4IRZ
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CRYSTAL STRUCTURE OF A4B7 HEADPIECE COMPLEXED WITH FAB NATALIZUMAB
Descriptor:Integrin alpha4 subunit, Fab Natalizumab light chain, Fab Natalizumab heavy chain
Authors:Yu, Y., Schurpf, T., Springer, T.A.
Deposit date:2013-01-15
Release date:2013-09-25
Modification date:2014-02-05
Method:X-RAY DIFFRACTION (2.84 Å)
Cite:How natalizumab binds and antagonizes alpha 4 integrins.
J.Biol.Chem., 288, 2013
2BB0
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STRUCTURE OF IMIDAZOLONEPROPIONASE FROM BACILLUS SUBTILIS
Descriptor:Imidazolonepropionase (E.C.3.5.2.7)
Authors:Liang, Y.H., Yu, Y., Su, X.D.
Deposit date:2005-10-16
Release date:2006-09-26
Modification date:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:A catalytic mechanism revealed by the crystal structures of the imidazolonepropionase from Bacillus subtilis
J.Biol.Chem., 281, 2006
4MKI
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COBALT TRANSPORTER ATP-BINDING SUBUNIT
Descriptor:Energy-coupling factor transporter ATP-binding protein EcfA2 (E.C.3.6.3.-)
Authors:Yu, Y., Zhang, L., Chai, C.L., Heymann, D.
Deposit date:2013-09-05
Release date:2013-10-30
Modification date:2014-06-11
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural basis for a homodimeric ATPase subunit of an ECF transporter
Protein Cell, 4, 2013
3DCG
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CRYSTAL STRUCTURE OF THE HIV VIF BC-BOX IN COMPLEX WITH HUMAN ELONGINB AND ELONGINC
Descriptor:Transcription elongation factor B polypeptide 2, Transcription elongation factor B polypeptide 1, Virion infectivity factor
Authors:Stanley, B.J., Ehrlich, E.S., Short, L., Yu, Y., Xiao, Z., Yu, X.-F., Xiong, Y.
Deposit date:2008-06-03
Release date:2008-07-08
Modification date:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural insight into the human immunodeficiency virus Vif SOCS box and its role in human E3 ubiquitin ligase assembly
J.Virol., 82, 2008
4EJQ
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CRYSTAL STRUCTURE OF KIF1A C-CC1-FHA
Descriptor:Kinesin-like protein KIF1A
Authors:Huo, L., Yue, Y., Ren, J., Yu, J., Liu, J., Yu, Y., Ye, F., Xu, T., Zhang, M., Feng, W.
Deposit date:2012-04-06
Release date:2012-10-03
Method:X-RAY DIFFRACTION (1.893 Å)
Cite:The CC1-FHA Tandem as a Central Hub for Controlling the Dimerization and Activation of Kinesin-3 KIF1A
Structure, 20, 2012
1AYG
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SOLUTION STRUCTURE OF CYTOCHROME C-552, NMR, 20 STRUCTURES
Descriptor:CYTOCHROME C-552, HEME C
Authors:Hasegawa, J., Yoshida, T., Yamazaki, T., Sambongi, Y., Yu, Y., Igarashi, Y., Kodama, T., Yamazaki, K., Hakusui, H., Kyogoku, Y., Kobayashi, Y.
Deposit date:1997-11-04
Release date:1998-11-25
Modification date:2009-02-24
Method:SOLUTION NMR
Cite:Solution structure of thermostable cytochrome c-552 from Hydrogenobacter thermophilus determined by 1H-NMR spectroscopy.
Biochemistry, 37, 1998
3N6M
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CRYSTAL STRUCTURE OF EV71 RDRP IN COMPLEX WITH GTP
Descriptor:RNA-dependent RNA polymerase
Authors:Wu, Y., Lou, Z.Y., Miao, Y., Yu, Y., Rao, Z.H.
Deposit date:2010-05-26
Release date:2011-06-15
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structures of EV71 RNA-dependent RNA polymerase in complex with substrate and analogue provide a drug target against the hand-foot-and-mouth disease pandemic in China.
Protein Cell, 1, 2010
3N6N
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CRYSTAL STRUCTURE OF EV71 RDRP IN COMPLEX WITH BR-UTP
Descriptor:RNA-dependent RNA polymerase
Authors:Wu, Y., Lou, Z.Y., Miao, Y., Yu, Y., Rao, Z.H.
Deposit date:2010-05-26
Release date:2011-06-15
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structures of EV71 RNA-dependent RNA polymerase in complex with substrate and analogue provide a drug target against the hand-foot-and-mouth disease pandemic in China.
Protein Cell, 1, 2010
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