Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
4P79
DownloadVisualize
BU of 4p79 by Molmil
Crystal structure of mouse claudin-15
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, Claudin-15
Authors:Suzuki, H, Nishizawa, T, Tani, K, Yamazaki, Y, Tamura, A, Ishitani, R, Dohmae, N, Tsukita, S, Nureki, O, Fujiyoshi, Y.
Deposit date:2014-03-26
Release date:2014-04-30
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of a claudin provides insight into the architecture of tight junctions.
Science, 344, 2014
1WVR
DownloadVisualize
BU of 1wvr by Molmil
Crystal Structure of a CRISP family Ca-channel blocker derived from snake venom
Descriptor: CADMIUM ION, Triflin
Authors:Shikamoto, Y, Suto, K, Yamazaki, Y, Morita, T, Mizuno, H.
Deposit date:2004-12-24
Release date:2005-07-05
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of a CRISP family Ca2+ -channel blocker derived from snake venom.
J.Mol.Biol., 350, 2005
2D01
DownloadVisualize
BU of 2d01 by Molmil
Wild Type Photoactive Yellow Protein, P65 Form
Descriptor: 4'-HYDROXYCINNAMIC ACID, Photoactive yellow protein
Authors:Shimizu, N, Kamikubo, H, Yamazaki, Y, Imamoto, Y, Kataoka, M.
Deposit date:2005-07-21
Release date:2006-04-04
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.34 Å)
Cite:The Crystal Structure of the R52Q Mutant Demonstrates a Role for R52 in Chromophore pK(a) Regulation in Photoactive Yellow Protein
Biochemistry, 45, 2006
2D02
DownloadVisualize
BU of 2d02 by Molmil
R52Q Mutant of Photoactive Yellow Protein, P65 Form
Descriptor: 4'-HYDROXYCINNAMIC ACID, Photoactive yellow protein
Authors:Shimizu, N, Kamikubo, H, Yamazaki, Y, Imamoto, Y, Kataoka, M.
Deposit date:2005-07-21
Release date:2006-04-04
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.42 Å)
Cite:The Crystal Structure of the R52Q Mutant Demonstrates a Role for R52 in Chromophore pK(a) Regulation in Photoactive Yellow Protein
Biochemistry, 45, 2006
1WQ8
DownloadVisualize
BU of 1wq8 by Molmil
Crystal structure of Vammin, a VEGF-F from a snake venom
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Vascular endothelial growth factor toxin
Authors:Suto, K, Yamazaki, Y, Morita, T, Mizuno, H.
Deposit date:2004-09-23
Release date:2004-12-07
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structures of novel vascular endothelial growth factors (VEGF) from snake venoms: insight into selective VEGF binding to kinase insert domain-containing receptor but not to fms-like tyrosine kinase-1.
J.Biol.Chem., 280, 2005
1WQ9
DownloadVisualize
BU of 1wq9 by Molmil
Crystal structure of VR-1, a VEGF-F from a snake venom
Descriptor: Vascular endothelial growth factor
Authors:Suto, K, Yamazaki, Y, Morita, T, Mizuno, H.
Deposit date:2004-09-24
Release date:2004-12-07
Last modified:2019-12-25
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structures of novel vascular endothelial growth factors (VEGF) from snake venoms: insight into selective VEGF binding to kinase insert domain-containing receptor but not to fms-like tyrosine kinase-1.
J.Biol.Chem., 280, 2005
2DDB
DownloadVisualize
BU of 2ddb by Molmil
Crystal structure of pseudecin from Pseudechis porphyriacus
Descriptor: FORMIC ACID, GLYCEROL, Pseudecin, ...
Authors:Suzuki, N, Yamazaki, Y, Fujimoto, Z, Morita, T, Mizuno, H.
Deposit date:2006-01-25
Release date:2007-01-30
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structures of pseudechetoxin and pseudecin, two snake-venom cysteine-rich secretory proteins that target cyclic nucleotide-gated ion channels: implications for movement of the C-terminal cysteine-rich domain
Acta Crystallogr.,Sect.D, 64, 2008
2DDA
DownloadVisualize
BU of 2dda by Molmil
Crystal structure of pseudechetoxin from Pseudechis australis
Descriptor: FORMIC ACID, GLYCEROL, Pseudechetoxin, ...
Authors:Suzuki, N, Yamazaki, Y, Fujimoto, Z, Morita, T, Mizuno, H.
Deposit date:2006-01-25
Release date:2007-01-30
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Structures of pseudechetoxin and pseudecin, two snake-venom cysteine-rich secretory proteins that target cyclic nucleotide-gated ion channels: implications for movement of the C-terminal cysteine-rich domain
Acta Crystallogr.,Sect.D, 64, 2008
2EPF
DownloadVisualize
BU of 2epf by Molmil
Crystal Structure of Zinc-Bound Pseudecin From Pseudechis Porphyriacus
Descriptor: Pseudecin, SODIUM ION, ZINC ION
Authors:Suzuki, N, Yamazaki, Y, Fujimoto, Z, Morita, T, Mizuno, H.
Deposit date:2007-03-29
Release date:2008-03-11
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structures of pseudechetoxin and pseudecin, two snake-venom cysteine-rich secretory proteins that target cyclic nucleotide-gated ion channels: implications for movement of the C-terminal cysteine-rich domain
Acta Crystallogr.,Sect.D, 64, 2008
8WAG
DownloadVisualize
BU of 8wag by Molmil
Crystal structure of the C-terminal fragment (residues 716-982) of Arabidopsis thaliana CHUP1
Descriptor: Protein CHUP1, chloroplastic
Authors:Shimada, A, Nakamura, Y, Takano, A, Kohda, D.
Deposit date:2023-09-07
Release date:2024-01-17
Last modified:2024-04-10
Method:X-RAY DIFFRACTION (3.003 Å)
Cite:CHLOROPLAST UNUSUAL POSITIONING 1 is a plant-specific actin polymerization factor regulating chloroplast movement.
Plant Cell, 36, 2024
8WAF
DownloadVisualize
BU of 8waf by Molmil
Crystal structure of the C-terminal fragment (residues 756-982 with the C864S mutation) of Arabidopsis thaliana CHUP1
Descriptor: Protein CHUP1, chloroplastic
Authors:Shimada, A, Takano, A, Nakamura, Y, Kohda, D.
Deposit date:2023-09-07
Release date:2024-01-17
Last modified:2024-04-10
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:CHLOROPLAST UNUSUAL POSITIONING 1 is a plant-specific actin polymerization factor regulating chloroplast movement.
Plant Cell, 36, 2024
5GX9
DownloadVisualize
BU of 5gx9 by Molmil
PYP mutant - E46Q
Descriptor: 4'-HYDROXYCINNAMIC ACID, Photoactive yellow protein
Authors:Yonezawa, K.
Deposit date:2016-09-16
Release date:2017-08-30
Last modified:2023-11-08
Method:NEUTRON DIFFRACTION (1.493 Å)
Cite:Neutron crystallography of photoactive yellow protein reveals unusual protonation state of Arg52 in the crystal
Sci Rep, 7, 2017
2ZOH
DownloadVisualize
BU of 2zoh by Molmil
X-ray Crystal Structure of Photoactive Yellow Protein, Wild type, at 295K
Descriptor: 4'-HYDROXYCINNAMIC ACID, Photoactive yellow protein
Authors:Yamaguchi, S.
Deposit date:2008-05-20
Release date:2009-03-24
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:Low-barrier hydrogen bond in photoactive yellow protein
Proc.Natl.Acad.Sci.USA, 106, 2009
2ZOI
DownloadVisualize
BU of 2zoi by Molmil
Neutron Crystal Structure of Photoactive Yellow Protein, Wild type, at 295K
Descriptor: 4'-HYDROXYCINNAMIC ACID, Photoactive yellow protein
Authors:Yamaguchi, S.
Deposit date:2008-05-21
Release date:2009-03-24
Last modified:2023-11-01
Method:NEUTRON DIFFRACTION (1.5 Å)
Cite:Low-barrier hydrogen bond in photoactive yellow protein
Proc.Natl.Acad.Sci.USA, 106, 2009
3VHZ
DownloadVisualize
BU of 3vhz by Molmil
Crystal structure of the trans isomer of the L93A mutant of bacteriorhodopsin
Descriptor: 2,3-DI-PHYTANYL-GLYCEROL, 3-O-sulfo-beta-D-galactopyranose-(1-6)-alpha-D-mannopyranose-(1-2)-alpha-D-glucopyranose, Bacteriorhodopsin, ...
Authors:Kouyama, T, Zhang, J.
Deposit date:2011-09-13
Release date:2012-06-13
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of the O intermediate of the Leu93Ala mutant of bacteriorhodopsin
Proteins, 80, 2012
3VI0
DownloadVisualize
BU of 3vi0 by Molmil
Crystal structure of the O intermediate of the L93A mutant of bacteriorhodopsin
Descriptor: 2,3-DI-PHYTANYL-GLYCEROL, 3-O-sulfo-beta-D-galactopyranose-(1-6)-alpha-D-mannopyranose-(1-2)-alpha-D-glucopyranose, Bacteriorhodopsin, ...
Authors:Kouyama, T, Zhang, J.
Deposit date:2011-09-13
Release date:2012-06-13
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of the O intermediate of the Leu93Ala mutant of bacteriorhodopsin
Proteins, 80, 2012
7XWP
DownloadVisualize
BU of 7xwp by Molmil
Human Estrogen Receptor beta Ligand-binding Domain in Complex with (S)-3-(2-chloro-4-hydroxyphenyl)-2-(4-hydroxyphenyl)propanenitrile
Descriptor: (2~{S})-3-(2-chloranyl-4-oxidanyl-phenyl)-2-(4-hydroxyphenyl)propanenitrile, Estrogen receptor beta, SRC peptide
Authors:Furuya, N, Handa, C.
Deposit date:2022-05-27
Release date:2022-07-20
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.919 Å)
Cite:Evaluating the correlation of binding affinities between isothermal titration calorimetry and fragment molecular orbital method of estrogen receptor beta with diarylpropionitrile (DPN) or DPN derivatives.
J.Steroid Biochem.Mol.Biol., 222, 2022
7XVY
DownloadVisualize
BU of 7xvy by Molmil
Human Estrogen Receptor beta Ligand-binding Domain in Complex with S-DPN
Descriptor: (2~{S})-2,3-bis(4-hydroxyphenyl)propanenitrile, Estrogen receptor beta, Nuclear receptor coactivator 1
Authors:Furuya, N, Handa, C.
Deposit date:2022-05-25
Release date:2022-07-20
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.544 Å)
Cite:Evaluating the correlation of binding affinities between isothermal titration calorimetry and fragment molecular orbital method of estrogen receptor beta with diarylpropionitrile (DPN) or DPN derivatives.
J.Steroid Biochem.Mol.Biol., 222, 2022
7XWQ
DownloadVisualize
BU of 7xwq by Molmil
Human Estrogen Receptor beta Ligand-binding Domain in Complex with (R)-2-(2-chloro-4-hydroxyphenyl)-3-(4-hydroxyphenyl)propanenitrile
Descriptor: (2~{R})-2-(2-chloranyl-4-oxidanyl-phenyl)-3-(4-hydroxyphenyl)propanenitrile, Estrogen receptor beta, SRC peptide
Authors:Furuya, N, Handa, C.
Deposit date:2022-05-27
Release date:2022-07-20
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.89 Å)
Cite:Evaluating the correlation of binding affinities between isothermal titration calorimetry and fragment molecular orbital method of estrogen receptor beta with diarylpropionitrile (DPN) or DPN derivatives.
J.Steroid Biochem.Mol.Biol., 222, 2022
7XWR
DownloadVisualize
BU of 7xwr by Molmil
Human Estrogen Receptor beta Ligand-binding Domain in Complex with (S)-2-(2-chloro-4-hydroxyphenyl)-3-(4-hydroxyphenyl)propanenitrile
Descriptor: (2~{S})-2-(2-chloranyl-4-oxidanyl-phenyl)-3-(4-hydroxyphenyl)propanenitrile, Estrogen receptor beta, SRC peptide
Authors:Furuya, N, Handa, C.
Deposit date:2022-05-27
Release date:2022-07-20
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.164 Å)
Cite:Evaluating the correlation of binding affinities between isothermal titration calorimetry and fragment molecular orbital method of estrogen receptor beta with diarylpropionitrile (DPN) or DPN derivatives.
J.Steroid Biochem.Mol.Biol., 222, 2022
7XVZ
DownloadVisualize
BU of 7xvz by Molmil
Human Estrogen Receptor beta Ligand-binding Domain in Complex with (R)-3-(2-chloro-4-hydroxyphenyl)-2-(4-hydroxyphenyl)propanenitrile
Descriptor: (2~{R})-3-(2-chloranyl-4-oxidanyl-phenyl)-2-(4-hydroxyphenyl)propanenitrile, Estrogen receptor beta, SRC peptide
Authors:Furuya, N, Handa, C.
Deposit date:2022-05-25
Release date:2022-07-20
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.08 Å)
Cite:Evaluating the correlation of binding affinities between isothermal titration calorimetry and fragment molecular orbital method of estrogen receptor beta with diarylpropionitrile (DPN) or DPN derivatives.
J.Steroid Biochem.Mol.Biol., 222, 2022

218853

PDB entries from 2024-04-24

PDB statisticsPDBj update infoContact PDBjnumon