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2Z6E
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BU of 2z6e by Molmil
Crystal Structure of Human DAAM1 FH2
Descriptor: Disheveled-associated activator of morphogenesis 1
Authors:Yamashita, M, Higashi, T, Sato, Y, Shirakawa, R, Kita, T, Horiuchi, H, Fukai, S, Nureki, O.
Deposit date:2007-07-31
Release date:2008-05-27
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal structure of human DAAM1 formin homology 2 domain
Genes Cells, 12, 2007
3A58
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BU of 3a58 by Molmil
Crystal structure of Sec3p - Rho1p complex from Saccharomyces cerevisiae
Descriptor: Exocyst complex component SEC3, GTP-binding protein RHO1, MAGNESIUM ION, ...
Authors:Yamashita, M, Sato, Y, Yamagata, A, Mimura, H, Yoshikawa, A, Fukai, S.
Deposit date:2009-08-03
Release date:2010-01-12
Last modified:2021-11-10
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural basis for the Rho- and phosphoinositide-dependent localization of the exocyst subunit Sec3
Nat.Struct.Mol.Biol., 17, 2010
5B86
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BU of 5b86 by Molmil
Crystal structure of M-Sec
Descriptor: Tumor necrosis factor alpha-induced protein 2
Authors:Yamashita, M, Sato, Y, Yamagata, A, Fukai, S.
Deposit date:2016-06-12
Release date:2016-10-12
Last modified:2020-02-26
Method:X-RAY DIFFRACTION (3.017 Å)
Cite:Distinct Roles for the N- and C-terminal Regions of M-Sec in Plasma Membrane Deformation during Tunneling Nanotube Formation.
Sci Rep, 6, 2016
3JSV
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BU of 3jsv by Molmil
Crystal structure of mouse NEMO CoZi in complex with Lys63-linked di-ubiquitin
Descriptor: NF-kappa-B essential modulator, Ubiquitin
Authors:Yoshikawa, A, Sato, Y, Mimura, H, Yamashita, M, Yamagata, A, Fukai, S.
Deposit date:2009-09-11
Release date:2009-10-27
Last modified:2021-11-10
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal structure of the NEMO ubiquitin-binding domain in complex with Lys 63-linked di-ubiquitin
Febs Lett., 583, 2009
5H0Q
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BU of 5h0q by Molmil
Crystal structure of lipid binding protein Nakanori at 1.5A
Descriptor: Lipid binding protein
Authors:Makino, A, Abe, M, Ishitsuka, R, Murate, M, Kishimoto, T, Sakai, S, Hullin-Matsuda, F, Shimada, Y, Inaba, T, Miyatake, H, Tanaka, H, Kurahashi, A, Pack, C.G, Kasai, R.S, Kubo, S, Schieber, N.L, Dohmae, N, Tochio, N, Hagiwara, K, Sasaki, Y, Aida, Y, Fujimori, F, Kigawa, T, Nishikori, K, Parton, R.G, Kusumi, A, Sako, Y, Anderluh, G, Yamashita, M, Kobayashi, T, Greimel, P, Kobayashi, T.
Deposit date:2016-10-06
Release date:2016-10-19
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.501 Å)
Cite:A novel sphingomyelin/cholesterol domain-specific probe reveals the dynamics of the membrane domains during virus release and in Niemann-Pick type C
FASEB J., 31, 2017
1UKJ
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BU of 1ukj by Molmil
Detailed structure of L-Methionine-Lyase from Pseudomonas putida
Descriptor: Methionine gamma-lyase, SULFATE ION
Authors:Misaki, S, Takimoto, A, Takakura, T, Yoshioka, T, Yamashita, M, Tamura, T, Tanaka, H, Inagaki, K.
Deposit date:2003-08-24
Release date:2004-10-19
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Detailed structure of L-Methionine -Lyase from Pseudomonas putida
To be Published
2O7C
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BU of 2o7c by Molmil
Crystal structure of L-methionine-lyase from Pseudomonas
Descriptor: Methionine gamma-lyase, SULFATE ION
Authors:Misaki, S, Takimoto, A, Takakura, T, Yoshioka, T, Yamashita, M, Tamura, T, Tanaka, H, Inagaki, K.
Deposit date:2006-12-10
Release date:2007-12-11
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structure of the antitumour enzyme L-methionine gamma-lyase from Pseudomonas putida at 1.8 A resolution
J.Biochem.(Tokyo), 141, 2007
2ZNV
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BU of 2znv by Molmil
Crystal structure of human AMSH-LP DUB domain in complex with Lys63-linked ubiquitin dimer
Descriptor: 1,2-ETHANEDIOL, AMSH-like protease, Ubiquitin, ...
Authors:Sato, Y, Azusa, Y, Yamagata, A, Mimura, H, Wang, X, Yamashita, M, Ookata, K, Nureki, O, Iwai, K, Komada, M, Fukai, S.
Deposit date:2008-05-01
Release date:2008-09-02
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structural basis for specific cleavage of Lys 63-linked polyubiquitin chains
Nature, 455, 2008
2ZCC
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BU of 2zcc by Molmil
Ubiquitin crystallized under high pressure
Descriptor: Ubiquitin, ZINC ION
Authors:Kitahara, R, Tanaka, T, Yamashita, M, Araya, K, Yokoyama, S, Akasaka, K, Taniguchi, Y, Kato, M.
Deposit date:2007-11-08
Release date:2007-11-20
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Structure of Ubiquitin crystallized under high pressure
to be published
2ZNR
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BU of 2znr by Molmil
Crystal structure of the DUB domain of human AMSH-LP
Descriptor: 1,2-ETHANEDIOL, AMSH-like protease, PRASEODYMIUM ION, ...
Authors:Sato, Y, Azusa, Y, Yamagata, A, Mimura, H, Wang, X, Yamashita, M, Ookata, K, Nureki, O, Iwai, K, Komada, M, Fukai, S.
Deposit date:2008-05-01
Release date:2008-09-02
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Structural basis for specific cleavage of Lys 63-linked polyubiquitin chains
Nature, 455, 2008
3A9J
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BU of 3a9j by Molmil
Crystal structure of the mouse TAB2-NZF in complex with Lys63-linked di-ubiquitin
Descriptor: Mitogen-activated protein kinase kinase kinase 7-interacting protein 2, Ubiquitin, ZINC ION
Authors:Sato, Y, Yoshikawa, A, Yamashita, M, Yamagata, A, Fukai, S.
Deposit date:2009-10-29
Release date:2009-12-08
Last modified:2021-11-10
Method:X-RAY DIFFRACTION (1.18 Å)
Cite:Structural basis for specific recognition of Lys 63-linked polyubiquitin chains by NZF domains of TAB2 and TAB3
Embo J., 28, 2009
3A36
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BU of 3a36 by Molmil
Structural insight into the membrane insertion of tail-anchored proteins by Get3
Descriptor: ATPase GET3, ZINC ION
Authors:Yamagata, A, Mimura, H, Sato, Y, Yamashita, M, Yoshikawa, A, Fukai, S.
Deposit date:2009-06-10
Release date:2010-01-12
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural insight into the membrane insertion of tail-anchored proteins by Get3
Genes Cells, 15, 2010
3A1Q
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BU of 3a1q by Molmil
Crystal structure of the mouse RAP80 UIMs in complex with Lys63-linked di-ubiquitin
Descriptor: Ubiquitin, Ubiquitin interaction motif-containing protein 1
Authors:Sato, Y, Yoshikawa, A, Mimura, H, Yamashita, M, Yamagata, A, Fukai, S.
Deposit date:2009-04-21
Release date:2009-07-21
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural basis for specific recognition of Lys 63-linked polyubiquitin chains by tandem UIMs of RAP80
Embo J., 28, 2009
3A37
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BU of 3a37 by Molmil
Structural insight into the membrane insertion of tail-anchored proteins by Get3
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ATPase GET3, ZINC ION
Authors:Yamagata, A, Mimura, H, Sato, Y, Yamashita, M, Yoshikawa, A, Fukai, S.
Deposit date:2009-06-10
Release date:2010-01-12
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structural insight into the membrane insertion of tail-anchored proteins by Get3
Genes Cells, 15, 2010
3A9K
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BU of 3a9k by Molmil
Crystal structure of the mouse TAB3-NZF in complex with Lys63-linked di-ubiquitin
Descriptor: Mitogen-activated protein kinase kinase kinase 7-interacting protein 3, Ubiquitin, ZINC ION
Authors:Sato, Y, Yoshikawa, A, Yamashita, M, Yamagata, A, Fukai, S.
Deposit date:2009-10-29
Release date:2009-12-08
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Structural basis for specific recognition of Lys 63-linked polyubiquitin chains by NZF domains of TAB2 and TAB3
Embo J., 28, 2009
3B0A
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BU of 3b0a by Molmil
Crystal structure of the mouse HOIL1-L-NZF in complex with linear di-ubiquitin
Descriptor: Polyubiquitin-C, RanBP-type and C3HC4-type zinc finger-containing protein 1, TRIS(HYDROXYETHYL)AMINOMETHANE, ...
Authors:Sato, Y, Fujita, H, Yoshikawa, A, Yamashita, M, Yamagata, A, Kaiser, S.E, Iwai, K, Fukai, S.
Deposit date:2011-06-07
Release date:2011-12-14
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Specific recognition of linear ubiquitin chains by the Npl4 zinc finger (NZF) domain of the HOIL-1L subunit of the linear ubiquitin chain assembly complex
Proc.Natl.Acad.Sci.USA, 108, 2011
3B08
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BU of 3b08 by Molmil
Crystal structure of the mouse HOIL1-L-NZF in complex with linear di-ubiquitin
Descriptor: Polyubiquitin-C, RanBP-type and C3HC4-type zinc finger-containing protein 1, ZINC ION, ...
Authors:Sato, Y, Fujita, H, Yoshikawa, A, Yamashita, M, Yamagata, A, Kaiser, S.E, Iwai, K, Fukai, S.
Deposit date:2011-06-07
Release date:2011-12-14
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.701 Å)
Cite:Specific recognition of linear ubiquitin chains by the Npl4 zinc finger (NZF) domain of the HOIL-1L subunit of the linear ubiquitin chain assembly complex
Proc.Natl.Acad.Sci.USA, 108, 2011
6R5K
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BU of 6r5k by Molmil
Cryo-EM structure of a poly(A) RNP bound to the Pan2-Pan3 deadenylase
Descriptor: MAGNESIUM ION, PAN2-PAN3 deadenylation complex catalytic subunit PAN2, PAN2-PAN3 deadenylation complex subunit PAN3, ...
Authors:Schaefer, I.B, Conti, E.
Deposit date:2019-03-25
Release date:2019-05-29
Last modified:2019-12-18
Method:ELECTRON MICROSCOPY (4.8 Å)
Cite:Molecular Basis for poly(A) RNP Architecture and Recognition by the Pan2-Pan3 Deadenylase.
Cell, 177, 2019
8HPJ
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BU of 8hpj by Molmil
Crystal structure of the bacterial oxalate transporter OxlT in a ligand-free outward-facing form
Descriptor: Fv fragment Heavy chain, Fv fragment Light chain, Oxalate:formate antiporter
Authors:Shimamura, T, Hirai, T, Yamashita, A.
Deposit date:2022-12-12
Release date:2023-02-15
Last modified:2023-04-12
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Structure and mechanism of oxalate transporter OxlT in an oxalate-degrading bacterium in the gut microbiota.
Nat Commun, 14, 2023
8HPK
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BU of 8hpk by Molmil
Crystal structure of the bacterial oxalate transporter OxlT in an oxalate-bound occluded form
Descriptor: Fab fragment Heavy chein, Fab fragment Light chain, OXALATE ION, ...
Authors:Shimamura, T, Hirai, T, Yamashita, A.
Deposit date:2022-12-12
Release date:2023-02-15
Last modified:2023-04-12
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structure and mechanism of oxalate transporter OxlT in an oxalate-degrading bacterium in the gut microbiota.
Nat Commun, 14, 2023
7CEF
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BU of 7cef by Molmil
Crystal structure of PET-degrading cutinase Cut190 /S226P/R228S/ mutant with the C-terminal three residues deletion
Descriptor: Alpha/beta hydrolase family protein, CALCIUM ION, ZINC ION
Authors:Senga, A, Numoto, N, Ito, N, Kawai, F, Oda, M.
Deposit date:2020-06-23
Release date:2020-08-26
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Multiple structural states of Ca2+-regulated PET hydrolase, Cut190, and its correlation with activity and stability.
J.Biochem., 169, 2021
7CEH
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BU of 7ceh by Molmil
Crystal structure of PET-degrading cutinase Cut190 S176A/S226P/R228S/ mutant with the C-terminal three residues deletion in ligand ejecting form
Descriptor: Alpha/beta hydrolase family protein, CALCIUM ION
Authors:Senga, A, Numoto, N, Ito, N, Kawai, F, Oda, M.
Deposit date:2020-06-23
Release date:2020-08-26
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.09 Å)
Cite:Multiple structural states of Ca2+-regulated PET hydrolase, Cut190, and its correlation with activity and stability.
J.Biochem., 169, 2021
3A1R
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BU of 3a1r by Molmil
Neutron crystal structure analysis of bovine pancreatic ribonuclease A
Descriptor: Ribonuclease pancreatic
Authors:Yagi, D, Tanaka, I, Niimura, N.
Deposit date:2009-04-21
Release date:2009-09-01
Last modified:2023-11-01
Method:NEUTRON DIFFRACTION (1.7 Å)
Cite:A neutron crystallographic analysis of phosphate-free ribonuclease A at 1.7 A resolution
Acta Crystallogr.,Sect.D, 65, 2009
3AWK
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BU of 3awk by Molmil
Crystal structure of the polyketide synthase 1 from huperzia serrata
Descriptor: Chalcone synthase-like polyketide synthase, GLYCEROL, SULFATE ION
Authors:Morita, H, Kondo, S, Kato, R, Sugio, S, Kohno, T, Abe, I.
Deposit date:2011-03-23
Release date:2011-08-31
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2 Å)
Cite:Synthesis of unnatural alkaloid scaffolds by exploiting plant polyketide synthase.
Proc.Natl.Acad.Sci.USA, 108, 2011
3AWJ
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BU of 3awj by Molmil
Crystal structure of the Huperzia serrata polyketide synthase 1 complexed with CoA-SH
Descriptor: COENZYME A, Chalcone synthase-like polyketide synthase, SULFATE ION
Authors:Morita, H, Kondo, S, Kato, R, Sugio, S, Kohno, T, Abe, I.
Deposit date:2011-03-23
Release date:2011-08-31
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Synthesis of unnatural alkaloid scaffolds by exploiting plant polyketide synthase.
Proc.Natl.Acad.Sci.USA, 108, 2011

217705

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