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2RT4
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BU of 2rt4 by Molmil
NMR Structure of designed protein, AF.2A1, (Ensembles)
Descriptor: AF.2A1
Authors:Watanabe, H, Yamasaki, K, Honda, S.
Deposit date:2013-04-18
Release date:2014-01-01
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Tracing primordial protein evolution through structurally guided stepwise segment elongation.
J.Biol.Chem., 289, 2014
2ZW0
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BU of 2zw0 by Molmil
Crystal structure of a Streptococcal protein G B1 mutant
Descriptor: Protein LG, SULFATE ION
Authors:Watanabe, H, Matsumaru, H, Odahara, T, Suto, K, Honda, S.
Deposit date:2008-11-26
Release date:2009-03-03
Last modified:2021-11-10
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Optimizing pH response of affinity between protein G and IgG Fc: how electrostatic modulations affect protein-protein interactions.
J.Biol.Chem., 284, 2009
2ZW1
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BU of 2zw1 by Molmil
Crystal structure of a Streptococcal protein G B1 mutant
Descriptor: Protein LG
Authors:Watanabe, H, Matsumaru, H, Odahara, T, Suto, K, Honda, S.
Deposit date:2008-11-26
Release date:2009-03-03
Last modified:2021-11-10
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Optimizing pH response of affinity between protein G and IgG Fc: how electrostatic modulations affect protein-protein interactions.
J.Biol.Chem., 284, 2009
7E0E
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BU of 7e0e by Molmil
Crystal structure of mouse interferon alpha2 at 2.1 angstrom resolution
Descriptor: GLYCEROL, Interferon alpha-2, PHOSPHATE ION
Authors:Watanabe, H, Yabe-Wada, T, Unno, M.
Deposit date:2021-01-27
Release date:2021-04-07
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.102 Å)
Cite:Detailed structure of mouse interferon alpha 2 and its interaction with Sortilin.
J.Biochem., 170, 2021
2D7T
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BU of 2d7t by Molmil
Crystal structure of human anti polyhydroxybutyrate antibody Fv
Descriptor: anti polyhydroxybutyrate antibody Fv, heavy chain, light chain
Authors:Watanabe, H.
Deposit date:2005-11-29
Release date:2006-12-12
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:A human antibody fragment with high affinity for the biodegradable polymer film
To be Published
6KMC
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BU of 6kmc by Molmil
Crystal structure of a Streptococcal protein G B1 mutant
Descriptor: ACETIC ACID, Immunoglobulin G-binding protein G B1
Authors:Watanabe, H, Honda, S.
Deposit date:2019-07-31
Release date:2019-10-23
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.84 Å)
Cite:Histidine-Mediated Intramolecular Electrostatic Repulsion for Controlling pH-Dependent Protein-Protein Interaction.
Acs Chem.Biol., 14, 2019
3WKN
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BU of 3wkn by Molmil
Crystal structure of the artificial protein AFFinger p17 (AF.p17) complexed with Fc fragment of human IgG
Descriptor: AFFinger p17, Ig gamma-1 chain C region, beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose
Authors:Watanabe, H, Honda, S.
Deposit date:2013-10-29
Release date:2014-10-29
Last modified:2022-08-24
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Adaptive Assembly: Maximizing the Potential of a Given Functional Peptide with a Tailor-Made Protein Scaffold.
Chem.Biol., 22, 2015
1BQ5
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BU of 1bq5 by Molmil
NITRITE REDUCTASE FROM ALCALIGENES XYLOSOXIDANS GIFU 1051
Descriptor: COPPER (II) ION, NITRITE REDUCTASE
Authors:Inoue, T, Gotowda, M, Deligeer, Suzuki, S, Kataoka, K, Yamaguchi, K, Watanabe, H, Goho, M, Yasushi, K.A.I.
Deposit date:1998-08-21
Release date:1999-08-21
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Type 1 Cu structure of blue nitrite reductase from Alcaligenes xylosoxidans GIFU 1051 at 2.05 A resolution: comparison of blue and green nitrite reductases.
J.Biochem.(Tokyo), 124, 1998
1IZC
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BU of 1izc by Molmil
Crystal Structure Analysis of Macrophomate synthase
Descriptor: MAGNESIUM ION, PYRUVIC ACID, macrophomate synthase intermolecular Diels-Alderase
Authors:Ose, T, Watanabe, K, Mie, T, Honma, M, Watanabe, H, Yao, M, Oikawa, H, Tanaka, I.
Deposit date:2002-10-01
Release date:2003-04-01
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Insight into a natural Diels-Alder reaction from the structure of macrophomate synthase.
Nature, 422, 2003
1KSD
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BU of 1ksd by Molmil
The structure of Endoglucanase from termite, Nasutitermes takasagoensis, at pH 6.5.
Descriptor: CALCIUM ION, Endo-b-1,4-glucanase
Authors:Khademi, S, Guarino, L.A, Watanabe, H, Tokuda, G, Meyer, E.F.
Deposit date:2002-01-12
Release date:2003-01-21
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structure of an endoglucanase from termite, Nasutitermes takasagoensis.
Acta Crystallogr.,Sect.D, 58, 2002
1KSC
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BU of 1ksc by Molmil
The structure of Endoglucanase from termite, Nasutitermes takasagoensis, at pH 5.6.
Descriptor: CALCIUM ION, Endo-b-1,4-glucanase
Authors:Khademi, S, Guarino, L.A, Watanabe, H, Tokuda, G, Meyer, E.F.
Deposit date:2002-01-11
Release date:2003-01-21
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Structure of an endoglucanase from termite, Nasutitermes takasagoensis.
Acta Crystallogr.,Sect.D, 58, 2002
1KS8
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BU of 1ks8 by Molmil
The structure of Endoglucanase from termite, Nasutitermes takasagoensis, at pH 2.5.
Descriptor: Endo-b-1,4-glucanase, SULFATE ION
Authors:Khademi, S, Guarino, L.A, Watanabe, H, Tokuda, G, Meyer, E.F.
Deposit date:2002-01-11
Release date:2003-01-21
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Structure of an endoglucanase from termite, Nasutitermes takasagoensis.
Acta Crystallogr.,Sect.D, 58, 2002
3WIQ
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BU of 3wiq by Molmil
Crystal structure of kojibiose phosphorylase complexed with kojibiose
Descriptor: Kojibiose phosphorylase, SULFATE ION, alpha-D-glucopyranose-(1-2)-beta-D-glucopyranose
Authors:Okada, S, Yamamoto, T, Watanabe, H, Nishimoto, T, Chaen, H, Fukuda, S, Wakagi, T, Fushinobu, S.
Deposit date:2013-09-24
Release date:2014-02-05
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural and mutational analysis of substrate recognition in kojibiose phosphorylase
Febs J., 281, 2014
3WIR
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BU of 3wir by Molmil
Crystal structure of kojibiose phosphorylase complexed with glucose
Descriptor: GLYCEROL, Kojibiose phosphorylase, PHOSPHATE ION, ...
Authors:Okada, S, Yamamoto, T, Watanabe, H, Nishimoto, T, Chaen, H, Fukuda, S, Wakagi, T, Fushinobu, S.
Deposit date:2013-09-24
Release date:2014-02-05
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Structural and mutational analysis of substrate recognition in kojibiose phosphorylase
Febs J., 281, 2014
3APV
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BU of 3apv by Molmil
Crystal structure of the A variant of human alpha1-acid glycoprotein and amitriptyline complex
Descriptor: ACETIC ACID, Alpha-1-acid glycoprotein 2, Amitriptyline
Authors:Nishi, K, Ono, T, Nakamura, T, Fukunaga, N, Izumi, M, Watanabe, H, Suenaga, A, Maruyama, T, Yamagata, Y, Curry, S, Otagiri, M.
Deposit date:2010-10-21
Release date:2011-02-23
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Structural insights into differences in drug-binding selectivity between two forms of human alpha1-acid glycoprotein genetic variants, the A and F1*S forms.
J. Biol. Chem., 286, 2011
3APX
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BU of 3apx by Molmil
Crystal structure of the A variant of human alpha1-acid glycoprotein and chlorpromazine complex
Descriptor: 3-(2-chloro-10H-phenothiazin-10-yl)-N,N-dimethylpropan-1-amine, ACETIC ACID, Alpha-1-acid glycoprotein 2
Authors:Nishi, K, Ono, T, Nakamura, T, Fukunaga, N, Izumi, M, Watanabe, H, Suenaga, A, Maruyama, T, Yamagata, Y, Curry, S, Otagiri, M.
Deposit date:2010-10-21
Release date:2011-02-23
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural insights into differences in drug-binding selectivity between two forms of human alpha1-acid glycoprotein genetic variants, the A and F1*S forms.
J. Biol. Chem., 286, 2011
3APW
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BU of 3apw by Molmil
Crystal structure of the A variant of human alpha1-acid glycoprotein and disopyramide complex
Descriptor: Alpha-1-acid glycoprotein 2, Disopyramide
Authors:Nishi, K, Ono, T, Nakamura, T, Fukunaga, N, Izumi, M, Watanabe, H, Suenaga, A, Maruyama, T, Yamagata, Y, Curry, S, Otagiri, M.
Deposit date:2010-10-21
Release date:2011-02-23
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural insights into differences in drug-binding selectivity between two forms of human alpha1-acid glycoprotein genetic variants, the A and F1*S forms.
J. Biol. Chem., 286, 2011
3APU
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BU of 3apu by Molmil
Crystal structure of the A variant of human alpha1-acid glycoprotein
Descriptor: Alpha-1-acid glycoprotein 2, TETRAETHYLENE GLYCOL
Authors:Nishi, K, Ono, T, Nakamura, T, Fukunaga, N, Izumi, M, Watanabe, H, Suenaga, A, Maruyama, T, Yamagata, Y, Curry, S, Otagiri, M.
Deposit date:2010-10-21
Release date:2011-02-23
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural insights into differences in drug-binding selectivity between two forms of human alpha1-acid glycoprotein genetic variants, the A and F1*S forms.
J. Biol. Chem., 286, 2011
5VUA
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BU of 5vua by Molmil
Pim1 Kinase in complex with a benzofuranone inhibitor
Descriptor: (2Z)-6-methoxy-7-(piperazin-1-ylmethyl)-2-(1H-pyrrolo[2,3-c]pyridin-3-ylmethylidene)-1-benzofuran-3-one, GLYCEROL, PHOSPHATE ION, ...
Authors:Parker, L.J.
Deposit date:2017-05-18
Release date:2017-12-13
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Theoretical Analysis of Activity Cliffs among Benzofuranone-Class Pim1 Inhibitors Using the Fragment Molecular Orbital Method with Molecular Mechanics Poisson-Boltzmann Surface Area (FMO+MM-PBSA) Approach
J Chem Inf Model, 57, 2017
5VUC
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BU of 5vuc by Molmil
Pim1 Kinase in complex with a benzofuranone inhibitor
Descriptor: (2Z)-2-(1H-indol-3-ylmethylidene)-6-methoxy-7-(piperazin-1-ylmethyl)-1-benzofuran-3-one, GLYCEROL, Serine/threonine-protein kinase pim-1
Authors:Parker, L.J.
Deposit date:2017-05-18
Release date:2017-12-13
Last modified:2018-01-17
Method:X-RAY DIFFRACTION (2 Å)
Cite:Theoretical Analysis of Activity Cliffs among Benzofuranone-Class Pim1 Inhibitors Using the Fragment Molecular Orbital Method with Molecular Mechanics Poisson-Boltzmann Surface Area (FMO+MM-PBSA) Approach
J Chem Inf Model, 57, 2017
5VUB
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BU of 5vub by Molmil
Pim1 Kinase in complex with a benzofuranone inhibitor
Descriptor: (2Z)-6-methoxy-7-(piperazin-1-ylmethyl)-2-(1H-pyrrolo[3,2-b]pyridin-3-ylmethylidene)-1-benzofuran-3-one, GLYCEROL, Serine/threonine-protein kinase pim-1
Authors:Parker, L.J.
Deposit date:2017-05-18
Release date:2017-12-13
Last modified:2018-01-17
Method:X-RAY DIFFRACTION (2 Å)
Cite:Theoretical Analysis of Activity Cliffs among Benzofuranone-Class Pim1 Inhibitors Using the Fragment Molecular Orbital Method with Molecular Mechanics Poisson-Boltzmann Surface Area (FMO+MM-PBSA) Approach
J Chem Inf Model, 57, 2017
4ENY
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BU of 4eny by Molmil
Crystal Structure of Pim-1 kinase in complex with (2E,5Z)-2-(2-chlorophenylimino)-5-(4-hydroxy-3-methoxybenzylidene)thiazolidin-4-one
Descriptor: (2Z,5Z)-2-[(2-chlorophenyl)imino]-5-(4-hydroxy-3-methoxybenzylidene)-1,3-thiazolidin-4-one, DIMETHYL SULFOXIDE, GLYCEROL, ...
Authors:Parker, L.J, Handa, N, Yokoyama, S.
Deposit date:2012-04-13
Release date:2012-08-08
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.801 Å)
Cite:Flexibility of the P-loop of Pim-1 kinase: observation of a novel conformation induced by interaction with an inhibitor
Acta Crystallogr.,Sect.F, 68, 2012
4ENX
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BU of 4enx by Molmil
Crystal Structure of Pim-1 Kinase in complex with inhibitor (2E,5Z)-2-(2-chlorophenylimino)-5-(4-hydroxy-3-nitrobenzylidene)thiazolidin-4-one
Descriptor: (2Z,5Z)-2-[(2-chlorophenyl)imino]-5-(4-hydroxy-3-nitrobenzylidene)-1,3-thiazolidin-4-one, PHOSPHATE ION, Serine/threonine-protein kinase pim-1
Authors:Parker, L.J, Handa, N, Yokoyama, S.
Deposit date:2012-04-13
Release date:2012-08-08
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Flexibility of the P-loop of Pim-1 kinase: observation of a novel conformation induced by interaction with an inhibitor
Acta Crystallogr.,Sect.F, 68, 2012
1ETN
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BU of 1etn by Molmil
MOLECULAR STRUCTURE OF THE TOXIC DOMAIN OF HEAT-STABLE ENTEROTOXIN PRODUCED BY A PATHOGENIC STRAIN OF ESCHERICHIA COLI
Descriptor: 5-BETA-MERCAPTOPROPIONATE HEAT-STABLE ENTEROTOXIN
Authors:Sato, T, Shimonishi, Y.
Deposit date:1994-03-15
Release date:1996-01-29
Last modified:2017-11-29
Method:X-RAY DIFFRACTION (0.89 Å)
Cite:Molecular structure of the toxin domain of heat-stable enterotoxin produced by a pathogenic strain of Escherichia coli. A putative binding site for a binding protein on rat intestinal epithelial cell membranes.
J.Biol.Chem., 266, 1991
7PAZ
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BU of 7paz by Molmil
REDUCED MUTANT P80I PSEUDOAZURIN FROM A. FAECALIS
Descriptor: COPPER (II) ION, PSEUDOAZURIN
Authors:Adman, E.T, Libeu, C.A.P.
Deposit date:1997-02-21
Release date:1997-08-20
Last modified:2021-11-03
Method:X-RAY DIFFRACTION (2 Å)
Cite:Site-directed mutants of pseudoazurin: explanation of increased redox potentials from X-ray structures and from calculation of redox potential differences.
Biochemistry, 36, 1997

 

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