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5Z9W
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BU of 5z9w by Molmil
Ebola virus nucleoprotein-RNA complex
Descriptor: Ebolavirus nucleoprotein (residues 19-406), RNA (6-MER)
Authors:Sugita, Y, Matsunami, H, Kawaoka, Y, Noda, T, Wolf, M.
Deposit date:2018-02-05
Release date:2018-10-24
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Cryo-EM structure of the Ebola virus nucleoprotein-RNA complex at 3.6 angstrom resolution.
Nature, 563, 2018
3AYF
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BU of 3ayf by Molmil
Crystal structure of nitric oxide reductase
Descriptor: (1R)-2-{[(R)-(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(DODECANOYLOXY)METHYL]ETHYL (9Z)-OCTADEC-9-ENOATE, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, CALCIUM ION, ...
Authors:Matsumoto, Y, Tosha, T, Pisliakov, A.V, Hino, T, Sugimoti, H, Nagano, S, Sugita, Y, Shiro, Y.
Deposit date:2011-05-06
Release date:2012-01-25
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of quinol-dependent nitric oxide reductase from Geobacillus stearothermophilus
Nat.Struct.Mol.Biol., 19, 2012
3AYG
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BU of 3ayg by Molmil
Crystal structure of nitric oxide reductase complex with HQNO
Descriptor: (1R)-2-{[(R)-(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(DODECANOYLOXY)METHYL]ETHYL (9Z)-OCTADEC-9-ENOATE, 2-HEPTYL-4-HYDROXY QUINOLINE N-OXIDE, CALCIUM ION, ...
Authors:Matsumoto, Y, Tosha, T, Pisliakov, A.V, Hino, T, Sugimoti, H, Nagano, S, Sugita, Y, Shiro, Y.
Deposit date:2011-05-06
Release date:2012-01-25
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal structure of quinol-dependent nitric oxide reductase from Geobacillus stearothermophilus.
Nat.Struct.Mol.Biol., 19, 2012
6K60
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BU of 6k60 by Molmil
Structural and functional basis for HLA-G isoform recognition of immune checkpoint receptor LILRBs
Descriptor: Beta-2-microglobulin, HLA class I histocompatibility antigen, alpha chain G, ...
Authors:Kuroki, K, Matsubara, H, Kanda, R, Miyashita, N, Shiroishi, M, Fukunaga, Y, Kamishikiryo, J, Fukunaga, A, Hirose, K, Sugita, Y, Kita, S, Ose, T, Maenaka, K.
Deposit date:2019-05-31
Release date:2019-11-27
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.149 Å)
Cite:Structural and Functional Basis for LILRB Immune Checkpoint Receptor Recognition of HLA-G Isoforms.
J Immunol., 203, 2019
7F1M
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BU of 7f1m by Molmil
Marburg virus nucleoprotein-RNA complex
Descriptor: Nucleoprotein, RNA (5'-R(P*UP*UP*UP*UP*UP*U)-3')
Authors:Fujita, F.Y, Sugita, Y, Takamatsu, Y, Houri, K, Muramoto, Y, Nakano, M, Tsunoda, Y, Igarashi, M, Becker, S, Noda, T.
Deposit date:2021-06-09
Release date:2022-03-09
Last modified:2022-04-06
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Structural insight into Marburg virus nucleoprotein-RNA complex formation.
Nat Commun, 13, 2022
7YR8
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BU of 7yr8 by Molmil
Lloviu cuevavirus nucleoprotein(1-450 residues)-RNA complex
Descriptor: Nucleoprotein, RNA (5'-R(P*UP*UP*UP*UP*UP*U)-3')
Authors:Hu, S.F, Fujita-Fujiharu, Y, Sugita, Y, Wendt, L, Muramoto, Y, Nakano, M, Hoenen, T, Noda, T.
Deposit date:2022-08-09
Release date:2023-04-19
Last modified:2023-05-24
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Cryoelectron microscopic structure of the nucleoprotein-RNA complex of the European filovirus, Lloviu virus.
Pnas Nexus, 2, 2023
7YPW
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BU of 7ypw by Molmil
Lloviu cuevavirus nucleoprotein-RNA complex
Descriptor: Nucleoprotein, RNA (5'-R(P*UP*UP*UP*UP*UP*U)-3')
Authors:Hu, S.F, Fujita-Fujiharu, Y, Sugita, Y, Wendt, L, Muramoto, Y, Nakano, M, Hoenen, T, Noda, T.
Deposit date:2022-08-04
Release date:2023-04-19
Last modified:2023-05-24
Method:ELECTRON MICROSCOPY (3.0356 Å)
Cite:Cryoelectron microscopic structure of the nucleoprotein-RNA complex of the European filovirus, Lloviu virus.
Pnas Nexus, 2, 2023
7WU9
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BU of 7wu9 by Molmil
Cryo-EM structure of the human EP3-Gi signaling complex
Descriptor: Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, Guanine nucleotide-binding protein G(i) subunit alpha-1, ...
Authors:Suno, R, Sugita, Y, Morimoto, K, Iwasaki, K, Kato, T, Kobayashi, T.
Deposit date:2022-02-07
Release date:2022-08-17
Last modified:2023-10-04
Method:ELECTRON MICROSCOPY (3.375 Å)
Cite:Structural insights into the G protein selectivity revealed by the human EP3-G i signaling complex.
Cell Rep, 40, 2022
5GUX
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BU of 5gux by Molmil
Cytochrome c-dependent nitric oxide reductase (cNOR) from Pseudomonas aeruginosa in complex with xenon
Descriptor: Antibody fab fragment heavy chain, Antibody fab fragment light chain, CALCIUM ION, ...
Authors:Ishii, S, Terasaka, E, Sugimoto, H, Shiro, Y, Tosha, T.
Deposit date:2016-08-31
Release date:2017-08-16
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Dynamics of nitric oxide controlled by protein complex in bacterial system.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
5GUW
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BU of 5guw by Molmil
Complex of Cytochrome cd1 Nitrite Reductase and Nitric Oxide Reductase in Denitrification of Pseudomonas aeruginosa
Descriptor: CALCIUM ION, CHLORIDE ION, FE (III) ION, ...
Authors:Terasaka, E, Sugimoto, H, Shiro, Y, Tosha, T.
Deposit date:2016-08-31
Release date:2017-08-16
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Dynamics of nitric oxide controlled by protein complex in bacterial system
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
5AZ8
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BU of 5az8 by Molmil
Crystal structure of MBP-Tom20 fusion protein tethered with ALDH presequence via a disulfide bond
Descriptor: ACETYLAMINO-ACETIC ACID, Maltose-binding periplasmic protein,Mitochondrial import receptor subunit TOM20 homolog, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose, ...
Authors:Matsuoka, R, Kohda, D.
Deposit date:2015-09-27
Release date:2016-01-13
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Rational design of crystal contact-free space in protein crystals for analyzing spatial distribution of motions within protein molecules.
Protein Sci., 25, 2016
5AWW
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BU of 5aww by Molmil
Precise Resting State of Thermus thermophilus SecYEG
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, Protein translocase subunit SecE, Protein translocase subunit SecY, ...
Authors:Tanaka, Y, Sugano, Y, Takemoto, M, Kusakizako, T, Kumazaki, K, Ishitani, R, Nureki, O, Tsukazaki, T.
Deposit date:2015-07-10
Release date:2015-11-25
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.724 Å)
Cite:Crystal Structures of SecYEG in Lipidic Cubic Phase Elucidate a Precise Resting and a Peptide-Bound State.
Cell Rep, 13, 2015
5CH4
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BU of 5ch4 by Molmil
Peptide-Bound State of Thermus thermophilus SecYEG
Descriptor: Protein translocase subunit SecE, Protein translocase subunit SecY, Putative preprotein translocase, ...
Authors:Tanaka, Y, Sugano, Y, Takemoto, M, Kusakizako, T, Kumazaki, K, Ishitani, R, Nureki, O, Tsukazaki, T.
Deposit date:2015-07-10
Release date:2015-11-25
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.64 Å)
Cite:Crystal Structures of SecYEG in Lipidic Cubic Phase Elucidate a Precise Resting and a Peptide-Bound State.
Cell Rep, 13, 2015
5XAP
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BU of 5xap by Molmil
Crystal structure of SecDF in I form (C2 space group)
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, DI(HYDROXYETHYL)ETHER, Protein translocase subunit SecD
Authors:Tsukazaki, T, Tanaka, Y, Furukwa, A.
Deposit date:2017-03-14
Release date:2017-05-17
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.605 Å)
Cite:Tunnel Formation Inferred from the I-Form Structures of the Proton-Driven Protein Secretion Motor SecDF
Cell Rep, 19, 2017
5XAM
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BU of 5xam by Molmil
Crystal structure of SecDF in I form at 4 A resolution
Descriptor: Protein translocase subunit SecD
Authors:Tsukazaki, T, Tanaka, Y, Furukwa, A.
Deposit date:2017-03-14
Release date:2017-05-17
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (4 Å)
Cite:Tunnel Formation Inferred from the I-Form Structures of the Proton-Driven Protein Secretion Motor SecDF
Cell Rep, 19, 2017
5XAN
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BU of 5xan by Molmil
Crystal structure of SecDF in I form (P212121 space group)
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, POLYETHYLENE GLYCOL (N=34), Protein translocase subunit SecD
Authors:Tsukazaki, T, Tanaka, Y, Furukwa, A.
Deposit date:2017-03-14
Release date:2017-05-17
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Tunnel Formation Inferred from the I-Form Structures of the Proton-Driven Protein Secretion Motor SecDF
Cell Rep, 19, 2017
5AZ7
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BU of 5az7 by Molmil
Crystal structure of MBP-Tom20 fusion protein with a 4-residue spacer in the connector helix
Descriptor: Maltose-binding periplasmic protein,Mitochondrial import receptor subunit TOM20 homolog, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose
Authors:Matsuoka, R, Kohda, D.
Deposit date:2015-09-27
Release date:2016-01-13
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.96 Å)
Cite:Rational design of crystal contact-free space in protein crystals for analyzing spatial distribution of motions within protein molecules.
Protein Sci., 25, 2016
5AZ9
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BU of 5az9 by Molmil
Crystal structure of (5-residue deleted)MBP-Tom20 fusion protein tethered with ALDH presequence via a disulfide bond
Descriptor: Maltose-binding periplasmic protein,Mitochondrial import receptor subunit TOM20 homolog
Authors:Matsuoka, R, Kohda, D.
Deposit date:2015-09-27
Release date:2016-01-13
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.82 Å)
Cite:Rational design of crystal contact-free space in protein crystals for analyzing spatial distribution of motions within protein molecules.
Protein Sci., 25, 2016
5AZA
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BU of 5aza by Molmil
Crystal structure of MBP-sAglB fusion protein with a 20-residue spacer in the connector helix
Descriptor: CALCIUM ION, Maltose-binding periplasmic protein,Oligosaccharyl transferase stt3 subunit related protein, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose
Authors:Matsuoka, R, Kohda, D.
Deposit date:2015-09-27
Release date:2016-01-13
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.08 Å)
Cite:Rational design of crystal contact-free space in protein crystals for analyzing spatial distribution of motions within protein molecules.
Protein Sci., 25, 2016
5AZ6
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BU of 5az6 by Molmil
Crystal structure of MBP-Tom20 fusion protein with a 2-residue spacer in the connector helix
Descriptor: Maltose-binding periplasmic protein,Mitochondrial import receptor subunit TOM20 homolog, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose
Authors:Matsuoka, R, Kohda, D.
Deposit date:2015-09-27
Release date:2016-01-13
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.56 Å)
Cite:Rational design of crystal contact-free space in protein crystals for analyzing spatial distribution of motions within protein molecules.
Protein Sci., 25, 2016
2AGV
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BU of 2agv by Molmil
Crystal structure of the SR CA2+-ATPASE with BHQ and TG
Descriptor: 2,5-DITERT-BUTYLBENZENE-1,4-DIOL, OCTANOIC ACID [3S-[3ALPHA, 3ABETA, ...
Authors:Toyoshima, C, Obara, K, Norimatsu, Y.
Deposit date:2005-07-27
Release date:2005-10-25
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Inaugural Article: Structural role of countertransport revealed in Ca2+ pump crystal structure in the absence of Ca2+.
Proc.Natl.Acad.Sci.USA, 102, 2005
3WO7
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BU of 3wo7 by Molmil
Crystal structure of YidC from Bacillus halodurans (form II)
Descriptor: COPPER (II) ION, Membrane protein insertase YidC 2
Authors:Kumazaki, K, Tsukazaki, T, Ishitani, R, Nureki, O.
Deposit date:2013-12-20
Release date:2014-04-23
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (3.201 Å)
Cite:Structural basis of Sec-independent membrane protein insertion by YidC.
Nature, 509, 2014
3WO6
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BU of 3wo6 by Molmil
Crystal structure of YidC from Bacillus halodurans (form I)
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, CADMIUM ION, Membrane protein insertase YidC 2
Authors:Kumazaki, K, Tsukazaki, T, Ishitani, R, Nureki, O.
Deposit date:2013-12-20
Release date:2014-04-23
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.403 Å)
Cite:Structural basis of Sec-independent membrane protein insertion by YidC.
Nature, 509, 2014
4IKX
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BU of 4ikx by Molmil
Crystal structure of peptide transporter POT (E310Q mutant)
Descriptor: Di-tripeptide ABC transporter (Permease), OLEIC ACID, SULFATE ION
Authors:Doki, S, Kato, H.E, Ishitani, R, Nureki, O.
Deposit date:2012-12-28
Release date:2013-07-10
Last modified:2022-08-24
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural basis for dynamic mechanism of proton-coupled symport by the peptide transporter POT.
Proc.Natl.Acad.Sci.USA, 110, 2013
4IKV
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BU of 4ikv by Molmil
Crystal structure of peptide transporter POT
Descriptor: (2S)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, Di-tripeptide ABC transporter (Permease), OLEIC ACID, ...
Authors:Doki, S, Kato, H.E, Ishitani, R, Nureki, O.
Deposit date:2012-12-28
Release date:2013-07-10
Last modified:2022-08-24
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural basis for dynamic mechanism of proton-coupled symport by the peptide transporter POT.
Proc.Natl.Acad.Sci.USA, 110, 2013

 

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