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7Y41
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BU of 7y41 by Molmil
Mycobacterium smegmatis 50S ribosomal subunit from Log Phase of growth
Descriptor: 23S ribosomal RNA, 50S ribosomal protein L10, 50S ribosomal protein L11, ...
Authors:Sengupta, J, Baid, P.
Deposit date:2022-06-13
Release date:2023-05-03
Method:ELECTRON MICROSCOPY (4.1 Å)
Cite:Cryo-EM structures reveal a unique conformational dynamics of the Mycobacterium 23S rRNA helices
To Be Published
3DNY
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BU of 3dny by Molmil
Fitting of the eEF2 crystal structure into the cryo-EM density map of the eEF2.80S.AlF4-.GDP complex
Descriptor: Elongation factor 2
Authors:Sengupta, J, Frank, J.
Deposit date:2008-07-03
Release date:2008-08-05
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (12.6 Å)
Cite:Visualization of the eEF2-80S ribosome transition-state complex by cryo-electron microscopy.
J.Mol.Biol., 382, 2008
1TRJ
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BU of 1trj by Molmil
Homology Model of Yeast RACK1 Protein fitted into 11.7A cryo-EM map of Yeast 80S Ribosome
Descriptor: Guanine nucleotide-binding protein beta subunit-like protein, Helix 39 of 18S rRNA, Helix 40 of 18S rRNA
Authors:Sengupta, J, Nilsson, J, Gursky, R, Spahn, C.M, Nissen, P, Frank, J.
Deposit date:2004-06-21
Release date:2004-09-28
Last modified:2024-02-14
Method:ELECTRON MICROSCOPY (11.7 Å)
Cite:Identification of the versatile scaffold protein RACK1 on the eukaryotic ribosome by cryo-EM
Nat.Struct.Mol.Biol., 11, 2004
7XAM
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BU of 7xam by Molmil
Mycobacterium smegmatis 50S ribosomal subunit from Stationary phase of growth
Descriptor: 23S rRNA, 50S ribosomal protein L10, 50S ribosomal protein L11, ...
Authors:Sengupta, J, Baid, P.
Deposit date:2022-03-18
Release date:2023-05-03
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:Cryo-EM structures reveal a unique conformational dynamics of the Mycobacterium 23S rRNA helices
To Be Published
6IY7
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BU of 6iy7 by Molmil
E. coli peptide deformylase crystal structure fitted into the cryo-EM density map of E. coli 70S ribosome in complex with peptide deformylase
Descriptor: Peptide deformylase
Authors:Sengupta, J, Akbar, S, Bhakta, S.
Deposit date:2018-12-13
Release date:2019-04-17
Last modified:2019-04-24
Method:ELECTRON MICROSCOPY (10.5 Å)
Cite:Cryo-EM Structures Reveal Relocalization of MetAP in the Presence of Other Protein Biogenesis Factors at the Ribosomal Tunnel Exit.
J. Mol. Biol., 431, 2019
6J45
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BU of 6j45 by Molmil
Crystal structure of E. coli peptide deformylase enzyme and chaperone trigger factor fitted into the cryo-EM density map of the complex
Descriptor: Peptide deformylase, Trigger factor
Authors:Sengupta, J, Bhakta, S, Akbar, S.
Deposit date:2019-01-07
Release date:2019-04-17
Method:ELECTRON MICROSCOPY (12.2 Å)
Cite:Cryo-EM Structures Reveal Relocalization of MetAP in the Presence of Other Protein Biogenesis Factors at the Ribosomal Tunnel Exit.
J. Mol. Biol., 431, 2019
6IZ7
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BU of 6iz7 by Molmil
E. coli methionine aminopeptidase crystal structure fitted into the cryo-EM density map of E. coli 70S ribosome in complex with methionine aminopeptidase
Descriptor: Methionine aminopeptidase
Authors:Sengupta, J, Bhakta, S, Akbar, S.
Deposit date:2018-12-18
Release date:2019-04-17
Method:ELECTRON MICROSCOPY (11.8 Å)
Cite:Cryo-EM Structures Reveal Relocalization of MetAP in the Presence of Other Protein Biogenesis Factors at the Ribosomal Tunnel Exit.
J. Mol. Biol., 431, 2019
6IZI
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BU of 6izi by Molmil
Crystal structure of E. coli peptide deformylase and methionine aminopeptidase fitted into the cryo-EM density map of the complex
Descriptor: Methionine aminopeptidase, Peptide deformylase
Authors:Sengupta, J, Bhakta, S, Akbar, S.
Deposit date:2018-12-19
Release date:2019-04-17
Method:ELECTRON MICROSCOPY (11.8 Å)
Cite:Cryo-EM Structures Reveal Relocalization of MetAP in the Presence of Other Protein Biogenesis Factors at the Ribosomal Tunnel Exit.
J. Mol. Biol., 431, 2019
6J0A
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BU of 6j0a by Molmil
Crystal structure of E. coli methionine aminopeptidase enzyme and chaperone trigger factor fitted into the cryo-EM density map of the complex
Descriptor: Methionine aminopeptidase, Trigger factor
Authors:Sengupta, J, Bhakta, S, Akbar, S.
Deposit date:2018-12-22
Release date:2019-04-17
Method:ELECTRON MICROSCOPY (14.2 Å)
Cite:Cryo-EM Structures Reveal Relocalization of MetAP in the Presence of Other Protein Biogenesis Factors at the Ribosomal Tunnel Exit.
J. Mol. Biol., 431, 2019
6JR3
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BU of 6jr3 by Molmil
Crystal structure of insulin hexamer fitted into cryo EM density map where each dimer was kept as rigid body
Descriptor: Insulin A chain, Insulin B chain
Authors:Sengupta, J, Pathak, B.K, Bhakta, S.
Deposit date:2019-04-02
Release date:2020-04-22
Last modified:2020-07-08
Method:ELECTRON MICROSCOPY (14.5 Å)
Cite:Resveratrol as a nontoxic excipient stabilizes insulin in a bioactive hexameric form.
J.Comput.Aided Mol.Des., 34, 2020
4V69
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BU of 4v69 by Molmil
Ternary complex-bound E.coli 70S ribosome.
Descriptor: 16S rRNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
Authors:Villa, E, Sengupta, J, Trabuco, L.G, LeBarron, J, Baxter, W.T, Shaikh, T.R, Grassucci, R.A, Nissen, P, Ehrenberg, M, Schulten, K, Frank, J.
Deposit date:2008-12-11
Release date:2014-07-09
Last modified:2024-02-28
Method:ELECTRON MICROSCOPY (6.7 Å)
Cite:Ribosome-induced changes in elongation factor Tu conformation control GTP hydrolysis
Proc.Natl.Acad.Sci.USA, 106, 2009
4V47
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BU of 4v47 by Molmil
Real space refined coordinates of the 30S and 50S subunits fitted into the low resolution cryo-EM map of the EF-G.GTP state of E. coli 70S ribosome
Descriptor: 16S RIBOSOMAL RNA, 23S ribosomal RNA, 30S RIBOSOMAL PROTEIN S10, ...
Authors:Gao, H, Sengupta, J, Valle, M, Korostelev, A, Eswar, N, Stagg, S.M, Van Roey, P, Agrawal, R.K, Harvey, S.T, Sali, A, Chapman, M.S, Frank, J.
Deposit date:2003-05-06
Release date:2014-07-09
Last modified:2024-02-28
Method:ELECTRON MICROSCOPY (12.3 Å)
Cite:Study of the structural dynamics of the E. coli 70S ribosome using real space refinement
Cell(Cambridge,Mass.), 113, 2003
1ZN1
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BU of 1zn1 by Molmil
Coordinates of RRF fitted into Cryo-EM map of the 70S post-termination complex
Descriptor: 30S ribosomal protein S12, Ribosome recycling factor, ribosomal 16S RNA, ...
Authors:Gao, N, Zavialov, A.V, Li, W, Sengupta, J, Valle, M, Gursky, R.P, Ehrenberg, M, Frank, J.
Deposit date:2005-05-11
Release date:2005-06-14
Last modified:2024-02-14
Method:ELECTRON MICROSCOPY (14.1 Å)
Cite:Mechanism for the disassembly of the posttermination complex inferred from cryo-EM studies.
Mol.Cell, 18, 2005
4V48
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BU of 4v48 by Molmil
Real space refined coordinates of the 30S and 50S subunits fitted into the low resolution cryo-EM map of the initiation-like state of E. coli 70S ribosome
Descriptor: 16S RIBOSOMAL RNA, 23S ribosomal RNA, 30S RIBOSOMAL PROTEIN S10, ...
Authors:Gao, H, Sengupta, J, Valle, M, Korostelev, A, Eswar, N, Stagg, S.M, Van Roey, P, Agrawal, R.K, Harvey, S.T, Sali, A, Chapman, M.S, Frank, J.
Deposit date:2003-05-06
Release date:2014-07-09
Last modified:2024-02-28
Method:ELECTRON MICROSCOPY (11.5 Å)
Cite:Study of the structural dynamics of the E. coli 70S ribosome using real space refinement
Cell(Cambridge,Mass.), 113, 2003
1ZN0
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BU of 1zn0 by Molmil
Coordinates of RRF and EF-G fitted into Cryo-EM map of the 50S subunit bound with both EF-G (GDPNP) and RRF
Descriptor: 16S RIBOSOMAL RNA, ELONGATION FACTOR G, Ribosome recycling factor
Authors:Gao, N, Zavialov, A.V, Li, W, Sengupta, J, Valle, M, Gursky, R.P, Ehrenberg, M, Frank, J.
Deposit date:2005-05-11
Release date:2005-06-14
Last modified:2024-02-14
Method:ELECTRON MICROSCOPY (15.5 Å)
Cite:Mechanism for the disassembly of the posttermination complex inferred from cryo-EM studies.
Mol.Cell, 18, 2005
3IYX
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BU of 3iyx by Molmil
Coordinates of the b1b bridge-forming protein structures fitted into the Cryo-EM map of E.coli 70S ribosome (EMD-1056)
Descriptor: 30S ribosomal protein S13, 50S ribosomal protein L31, 50S ribosomal protein L5
Authors:Shasmal, M, Chakraborty, B, Sengupta, J.
Deposit date:2010-07-23
Release date:2010-09-01
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (9 Å)
Cite:Intrinsic molecular properties of the protein-protein bridge facilitate ratchet-like motion of the ribosome
Biochem.Biophys.Res.Commun., 399, 2010
3IYY
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BU of 3iyy by Molmil
Coordinates of the b1b bridge-forming protein structures fitted into the Cryo-EM map of EFG.GDPNP-bound E.coli 70S ribosome(EMD-1363)
Descriptor: 30S ribosomal protein S13, 50S ribosomal protein L31, 50S ribosomal protein L5
Authors:Shasmal, M, Chakraborty, B, Sengupta, J.
Deposit date:2010-07-23
Release date:2010-09-01
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (10.9 Å)
Cite:Intrinsic molecular properties of the protein-protein bridge facilitate ratchet-like motion of the ribosome.
Biochem.Biophys.Res.Commun., 399, 2010
1LU3
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BU of 1lu3 by Molmil
Separate Fitting of the Anticodon Loop Region of tRNA (nucleotide 26-42) in the Low Resolution Cryo-EM Map of an EF-Tu Ternary Complex (GDP and Kirromycin) Bound to E. coli 70S Ribosome
Descriptor: PHENYLALANINE TRANSFER RNA
Authors:Valle, M, Sengupta, J, Swami, N.K, Grassucci, R.A, Burkhardt, N, Nierhaus, K.H, Agrawal, R.K, Frank, J.
Deposit date:2002-05-21
Release date:2002-06-26
Last modified:2024-02-14
Method:ELECTRON MICROSCOPY (16.799999 Å)
Cite:Cryo-EM reveals an active role for aminoacyl-tRNA in the accommodation process.
EMBO J., 21, 2002
1LS2
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BU of 1ls2 by Molmil
Fitting of EF-Tu and tRNA in the Low Resolution Cryo-EM Map of an EF-Tu Ternary Complex (GDP and Kirromycin) Bound to E. coli 70S Ribosome
Descriptor: Elongation Factor Tu, Phenylalanine transfer RNA
Authors:Valle, M, Sengupta, J, Swami, N.K, Grassucci, R.A, Burkhardt, N, Nierhaus, K.H, Agrawal, R.K, Frank, J.
Deposit date:2002-05-16
Release date:2002-06-26
Last modified:2024-02-14
Method:ELECTRON MICROSCOPY (16.799999 Å)
Cite:Cryo-EM reveals an active role for aminoacyl-tRNA in the accommodation process.
EMBO J., 21, 2002
1MI6
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BU of 1mi6 by Molmil
Docking of the modified RF2 X-ray structure into the Low Resolution Cryo-EM map of RF2 E.coli 70S Ribosome
Descriptor: peptide chain release factor RF-2
Authors:Rawat, U.B.S, Zavialov, A.V, Sengupta, J, Valle, M, Grassucci, R.A, Linde, J, Vestergaard, B, Ehrenberg, M, Frank, J.
Deposit date:2002-08-22
Release date:2003-01-14
Last modified:2024-02-14
Method:ELECTRON MICROSCOPY (12.8 Å)
Cite:A cryo-electron microscopic study of ribosome-bound termination factor RF2
Nature, 421, 2003
1MVR
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BU of 1mvr by Molmil
Decoding Center & Peptidyl transferase center from the X-ray structure of the Thermus thermophilus 70S ribosome, aligned to the low resolution Cryo-EM map of E.coli 70S Ribosome
Descriptor: 30S RIBOSOMAL PROTEIN S12, 50S ribosomal protein L11, Helix 34 of 16S rRNA, ...
Authors:Rawat, U.B, Zavialov, A.V, Sengupta, J, Valle, M, Grassucci, R.A, Linde, J, Vestergaard, B, Ehrenberg, M, Frank, J.
Deposit date:2002-09-26
Release date:2003-04-01
Last modified:2024-02-14
Method:ELECTRON MICROSCOPY (12.8 Å)
Cite:A cryo-electron microscopic study of ribosome-bound termination factor RF2
Nature, 421, 2003
5XZC
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BU of 5xzc by Molmil
Cryo-EM structure of p300-p53 protein complex
Descriptor: Cellular tumor antigen p53, Histone acetyltransferase p300
Authors:Ghosh, R, Roy, S, Sengupta, J.
Deposit date:2017-07-12
Release date:2019-01-23
Last modified:2019-07-31
Method:ELECTRON MICROSCOPY (10.7 Å)
Cite:Tumor suppressor p53-mediated structural reorganization of the transcriptional coactivator p300.
Biochemistry, 2019
1PN8
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BU of 1pn8 by Molmil
Coordinates of S12, L11 proteins and E-site tRNA from 70S crystal structure separately fitted into the Cryo-EM map of E.coli 70S.EF-G.GDPNP complex. The atomic coordinates originally from the E-site tRNA were fitted in the position of the hybrid P/E-site tRNA.
Descriptor: 30S ribosomal protein S12, 50S ribosomal protein L11, E-tRNA
Authors:Valle, M, Zavialov, A, Sengupta, J, Rawat, U, Ehrenberg, M, Frank, J.
Deposit date:2003-06-12
Release date:2003-07-15
Last modified:2024-02-14
Method:ELECTRON MICROSCOPY (10.8 Å)
Cite:Locking and Unlocking of Ribosomal Motions
Cell(Cambridge,Mass.), 114, 2003
1PN7
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BU of 1pn7 by Molmil
Coordinates of S12, L11 proteins and P-tRNA, from the 70S X-ray structure aligned to the 70S Cryo-EM map of E.coli ribosome
Descriptor: 30S ribosomal protein S12, 50S ribosomal protein L11, P-tRNA
Authors:Valle, M, Zavialov, A, Sengupta, J, Rawat, U, Ehrenberg, M, Frank, J.
Deposit date:2003-06-12
Release date:2003-07-15
Last modified:2024-02-14
Method:ELECTRON MICROSCOPY (10.8 Å)
Cite:Locking and Unlocking of Ribosomal Motions
Cell(Cambridge,Mass.), 114, 2003
1PN6
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BU of 1pn6 by Molmil
Domain-wise fitting of the crystal structure of T.thermophilus EF-G into the low resolution map of the release complex.Puromycin.EFG.GDPNP of E.coli 70S ribosome.
Descriptor: Elongation factor G
Authors:Valle, M, Zavialov, A, Sengupta, J, Rawat, U, Ehrenberg, M, Frank, J.
Deposit date:2003-06-12
Release date:2003-07-15
Last modified:2024-02-14
Method:ELECTRON MICROSCOPY (10.8 Å)
Cite:Locking and Unlocking of Ribosomal Motions
Cell(Cambridge,Mass.), 114, 2003

 

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