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1AT6
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BU of 1at6 by Molmil
HEN EGG WHITE LYSOZYME WITH A ISOASPARTATE RESIDUE
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, LYSOZYME
Authors:Noguchi, S, Miyawaki, K, Satow, Y.
Deposit date:1997-08-19
Release date:1998-02-25
Last modified:2023-08-02
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Succinimide and isoaspartate residues in the crystal structures of hen egg-white lysozyme complexed with tri-N-acetylchitotriose.
J.Mol.Biol., 278, 1998
1AT5
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BU of 1at5 by Molmil
HEN EGG WHITE LYSOZYME WITH A SUCCINIMIDE RESIDUE
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CHLORIDE ION, LYSOZYME, ...
Authors:Noguchi, S, Miyawaki, K, Satow, Y.
Deposit date:1997-08-18
Release date:1998-02-25
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Succinimide and isoaspartate residues in the crystal structures of hen egg-white lysozyme complexed with tri-N-acetylchitotriose.
J.Mol.Biol., 278, 1998
1RTU
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BU of 1rtu by Molmil
USTILAGO SPHAEROGENA RIBONUCLEASE U2
Descriptor: RIBONUCLEASE U2, SULFATE ION
Authors:Noguchi, S, Satow, Y, Uchida, T, Sasaki, C, Matsuzaki, T.
Deposit date:1995-05-12
Release date:1996-11-08
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of Ustilago sphaerogena ribonuclease U2 at 1.8 A resolution.
Biochemistry, 34, 1995
3AGO
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BU of 3ago by Molmil
Crystal Structure of Ustilago sphaerogena Ribonuclease U2 complexed with adenosine 3'-monophosphate
Descriptor: CALCIUM ION, CHLORIDE ION, Ribonuclease U2, ...
Authors:Noguchi, S.
Deposit date:2010-04-03
Release date:2010-07-07
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (0.99 Å)
Cite:Isomerization mechanism of aspartate to isoaspartate implied by structures of Ustilago sphaerogena ribonuclease U2 complexed with adenosine 3'-monophosphate
Acta Crystallogr.,Sect.D, 66, 2010
3AHS
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BU of 3ahs by Molmil
Crystal Structure of Ustilago sphaerogena Ribonuclease U2B
Descriptor: GLYCEROL, PHOSPHATE ION, POTASSIUM ION, ...
Authors:Noguchi, S.
Deposit date:2010-04-29
Release date:2010-07-07
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.32 Å)
Cite:Structural changes induced by the deamidation and isomerization of asparagine revealed by the crystal structure of Ustilago sphaerogena ribonuclease U2B
Biopolymers, 93, 2010
3AHW
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BU of 3ahw by Molmil
Crystal Structure of Ustilago sphaerogena Ribonuclease U2 complexed with adenosine 2'-monophosphate
Descriptor: ADENOSINE-2'-MONOPHOSPHATE, CALCIUM ION, Ribonuclease U2
Authors:Noguchi, S.
Deposit date:2010-05-04
Release date:2010-07-07
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.03 Å)
Cite:Conformational variation revealed by the crystal structure of RNase U2A complexed with Ca ion and 2'-adenylic acid at 1.03 angstrom resolution.
Protein Pept.Lett., 17, 2010
3AGN
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BU of 3agn by Molmil
Crystal Structure of Ustilago sphaerogena Ribonuclease U2 Complexed with adenosine 3'-monophosphate
Descriptor: CALCIUM ION, Ribonuclease U2, [(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-4-hydroxy-2-(hydroxymethyl)oxolan-3-yl] dihydrogen phosphate
Authors:Noguchi, S.
Deposit date:2010-04-03
Release date:2010-07-07
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (0.96 Å)
Cite:Isomerization mechanism of aspartate to isoaspartate implied by structures of Ustilago sphaerogena ribonuclease U2 complexed with adenosine 3'-monophosphate
Acta Crystallogr.,Sect.D, 66, 2010
1A0F
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BU of 1a0f by Molmil
CRYSTAL STRUCTURE OF GLUTATHIONE S-TRANSFERASE FROM ESCHERICHIA COLI COMPLEXED WITH GLUTATHIONESULFONIC ACID
Descriptor: GLUTATHIONE S-TRANSFERASE, GLUTATHIONE SULFONIC ACID
Authors:Nishida, M, Harada, S, Noguchi, S, Inoue, H, Takahashi, K, Satow, Y.
Deposit date:1997-11-29
Release date:1999-01-13
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Three-dimensional structure of Escherichia coli glutathione S-transferase complexed with glutathione sulfonate: catalytic roles of Cys10 and His106.
J.Mol.Biol., 281, 1998
6KDI
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BU of 6kdi by Molmil
Antibody 64M-5 Fab including isoAsp in complex with dT(6-4)T
Descriptor: Anti-(6-4) photoproduct antibody 64M-5 Fab (heavy chain), Anti-(6-4) photoproduct antibody 64M-5 Fab (light chain), DNA (5'-D(*(64T)P*(5PY))-3')
Authors:Yokoyama, H, Mizutani, R, Noguchi, S, Hayashida, N.
Deposit date:2019-07-02
Release date:2019-12-18
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural and biochemical basis of the formation of isoaspartate in the complementarity-determining region of antibody 64M-5 Fab.
Sci Rep, 9, 2019
6KDH
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BU of 6kdh by Molmil
Antibody 64M-5 Fab including isoAsp in ligand-free form
Descriptor: Anti-(6-4) photoproduct antibody 64M-5 Fab (heavy chain), Anti-(6-4) photoproduct antibody 64M-5 Fab (light chain)
Authors:Yokoyama, H, Mizutani, R, Noguchi, S, Hayashida, N.
Deposit date:2019-07-02
Release date:2019-12-18
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.47 Å)
Cite:Structural and biochemical basis of the formation of isoaspartate in the complementarity-determining region of antibody 64M-5 Fab.
Sci Rep, 9, 2019
6IDG
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BU of 6idg by Molmil
antibody 64M-5 Fab in complex with dT(6-4)T
Descriptor: Anti-(6-4) photoproduct antibody 64M-5 Fab (heavy chain), Anti-(6-4) photoproduct antibody 64M-5 Fab (light chain), DNA (5'-D(*(64T)P*(5PY))-3')
Authors:Yokoyama, H, Mizutani, R, Noguchi, S, Hayashida, N.
Deposit date:2018-09-10
Release date:2019-02-13
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structures of the antibody 64M-5 Fab and its complex with dT(6-4)T indicate induced-fit and high-affinity mechanisms.
Acta Crystallogr.,Sect.F, 75, 2019
6IDH
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BU of 6idh by Molmil
Antibody 64M-5 Fab in ligand-free form
Descriptor: Anti-(6-4) photoproduct antibody 64M-5 Fab (heavy chain), Anti-(6-4) photoproduct antibody 64M-5 Fab (light chain)
Authors:Yokoyama, H, Mizutani, R, Noguchi, S, Hayashida, N.
Deposit date:2018-09-10
Release date:2019-02-13
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structures of the antibody 64M-5 Fab and its complex with dT(6-4)T indicate induced-fit and high-affinity mechanisms.
Acta Crystallogr.,Sect.F, 75, 2019
2D19
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BU of 2d19 by Molmil
Solution RNA structure of loop region of the HIV-1 dimerization initiation site in the kissing-loop dimer
Descriptor: 5'-R(*GP*CP*UP*GP*AP*AP*GP*UP*GP*CP*AP*CP*AP*CP*GP*GP*C)-3'
Authors:Baba, S, Takahashi, K, Noguchi, S, Takaku, H, Koyanagi, Y, Yamamoto, N, Kawai, G.
Deposit date:2005-08-15
Release date:2005-11-01
Last modified:2022-03-09
Method:SOLUTION NMR
Cite:Solution RNA structures of the HIV-1 dimerization initiation site in the kissing-loop and extended-duplex dimers.
J.Biochem.(Tokyo), 138, 2005
2D17
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BU of 2d17 by Molmil
Solution RNA structure of stem-bulge-stem region of the HIV-1 dimerization initiation site
Descriptor: 5'-R(*CP*GP*GP*CP*AP*AP*GP*AP*GP*GP*CP*GP*AP*CP*CP*C)-3', 5'-R(*GP*GP*GP*UP*CP*GP*GP*CP*UP*UP*GP*CP*UP*G)-3'
Authors:Baba, S, Takahashi, K, Noguchi, S, Takaku, H, Koyanagi, Y, Yamamoto, N, Kawai, G.
Deposit date:2005-08-15
Release date:2005-11-01
Last modified:2022-03-09
Method:SOLUTION NMR
Cite:Solution RNA structures of the HIV-1 dimerization initiation site in the kissing-loop and extended-duplex dimers.
J.Biochem.(Tokyo), 138, 2005
2D1A
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BU of 2d1a by Molmil
Solution RNA structure model of the HIV-1 dimerization initiation site in the extended-duplex dimer
Descriptor: RNA
Authors:Baba, S, Takahashi, K, Noguchi, S, Takaku, H, Koyanagi, Y, Yamamoto, N, Kawai, G.
Deposit date:2005-08-15
Release date:2005-11-01
Last modified:2022-03-09
Method:SOLUTION NMR
Cite:Solution RNA structures of the HIV-1 dimerization initiation site in the kissing-loop and extended-duplex dimers.
J.Biochem.(Tokyo), 138, 2005
2D18
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BU of 2d18 by Molmil
Solution RNA structure of loop region of the HIV-1 dimerization initiation site in the extended-duplex dimer
Descriptor: 5'-R(*GP*CP*UP*GP*AP*AP*GP*UP*GP*CP*AP*CP*AP*CP*GP*GP*C)-3'
Authors:Baba, S, Takahashi, K, Noguchi, S, Takaku, H, Koyanagi, Y, Yamamoto, N, Kawai, G.
Deposit date:2005-08-15
Release date:2005-11-01
Last modified:2022-03-09
Method:SOLUTION NMR
Cite:Solution RNA structures of the HIV-1 dimerization initiation site in the kissing-loop and extended-duplex dimers.
J.Biochem.(Tokyo), 138, 2005
2D1B
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BU of 2d1b by Molmil
Solution RNA structure model of the HIV-1 dimerization initiation site in the kissing-loop dimer
Descriptor: RNA
Authors:Baba, S, Takahashi, K, Noguchi, S, Takaku, H, Koyanagi, Y, Yamamoto, N, Kawai, G.
Deposit date:2005-08-15
Release date:2005-11-01
Last modified:2022-03-09
Method:SOLUTION NMR
Cite:Solution RNA structures of the HIV-1 dimerization initiation site in the kissing-loop and extended-duplex dimers.
J.Biochem.(Tokyo), 138, 2005
3AK9
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BU of 3ak9 by Molmil
Crystal structure of the SEp22 dodecamer, a Dps-like protein from Salmonella enterica subsp. enterica serovar Enteritidis, FE-soaked form
Descriptor: DNA protection during starvation protein, FE (II) ION, MAGNESIUM ION, ...
Authors:Miyamoto, T, Asahina, Y, Miyazaki, S, Shimizu, H, Ohto, U, Noguchi, S, Satow, Y.
Deposit date:2010-07-08
Release date:2011-01-12
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Structures of the SEp22 dodecamer, a Dps-like protein from Salmonella enterica subsp. enterica serovar Enteritidis
Acta Crystallogr.,Sect.F, 67, 2011
3AK8
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BU of 3ak8 by Molmil
Crystal structure of the SEp22 dodecamer, a Dps-like protein from Salmonella enterica subsp. enterica serovar Enteritidis
Descriptor: DNA protection during starvation protein, MAGNESIUM ION, SULFATE ION
Authors:Miyamoto, T, Asahina, Y, Miyazaki, S, Shimizu, H, Ohto, U, Noguchi, S, Satow, Y.
Deposit date:2010-07-08
Release date:2011-01-12
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:Structures of the SEp22 dodecamer, a Dps-like protein from Salmonella enterica subsp. enterica serovar Enteritidis
Acta Crystallogr.,Sect.F, 67, 2011
3AGX
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BU of 3agx by Molmil
Crystal structure of human Hsp40 Hdj1 peptide-binding domain
Descriptor: DnaJ homolog subfamily B member 1
Authors:Suzuki, H, Noguchi, S, Satow, Y.
Deposit date:2010-04-12
Release date:2011-02-23
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Peptide-binding sites as revealed by the crystal structures of the human Hsp40 Hdj1 C-terminal domain in complex with the octapeptide from human Hsp70
Biochemistry, 49, 2010
3AGZ
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BU of 3agz by Molmil
Crystal structure of human Hsp40 Hdj1 peptide-binding domain complexed with a C-terminal peptide of Hsp70
Descriptor: DnaJ homolog subfamily B member 1, peptide of Heat shock cognate 71 kDa protein
Authors:Suzuki, H, Noguchi, S, Satow, Y.
Deposit date:2010-04-12
Release date:2011-02-23
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.51 Å)
Cite:Peptide-binding sites as revealed by the crystal structures of the human Hsp40 Hdj1 C-terminal domain in complex with the octapeptide from human Hsp70
Biochemistry, 49, 2010
3AGY
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Crystal structure of human Hsp40 Hdj1 peptide-binding domain complexed with a C-terminal peptide of Hsp70
Descriptor: DnaJ homolog subfamily B member 1, peptide of Heat shock cognate 71 kDa protein
Authors:Suzuki, H, Noguchi, S, Satow, Y.
Deposit date:2010-04-12
Release date:2011-02-23
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Peptide-binding sites as revealed by the crystal structures of the human Hsp40 Hdj1 C-terminal domain in complex with the octapeptide from human Hsp70
Biochemistry, 49, 2010
3VPK
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BU of 3vpk by Molmil
Crystal Structure of 6-Guanidinohexanoyl Trypsin
Descriptor: 6-carbamimidamidohexanoic acid, CALCIUM ION, Cationic trypsin, ...
Authors:Masuda, Y, Nitanai, Y, Mizutani, R, Noguchi, S.
Deposit date:2012-03-05
Release date:2012-05-23
Last modified:2013-02-06
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:Crystal structure of 6-guanidinohexanoyl trypsin near the optimum pH reveals the acyl-enzyme intermediate to be deacylated
Proteins, 2012
5SIC
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BU of 5sic by Molmil
MOLECULAR RECOGNITION AT THE ACTIVE SITE OF SUBTILISIN BPN': CRYSTALLOGRAPHIC STUDIES USING GENETICALLY ENGINEERED PROTEINACEOUS INHIBITOR SSI (STREPTOMYCES SUBTILISIN INHIBITOR)
Descriptor: CALCIUM ION, SUBTILISIN BPN', SUBTILISIN INHIBITOR (SSI)
Authors:Mitsui, Y, Takeuchi, Y, Nakamura, K.T.
Deposit date:1991-11-18
Release date:1994-01-31
Last modified:2017-11-29
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Molecular recognition at the active site of subtilisin BPN': crystallographic studies using genetically engineered proteinaceous inhibitor SSI (Streptomyces subtilisin inhibitor).
Protein Eng., 4, 1991
4Q21
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BU of 4q21 by Molmil
MOLECULAR SWITCH FOR SIGNAL TRANSDUCTION: STRUCTURAL DIFFERENCES BETWEEN ACTIVE AND INACTIVE FORMS OF PROTOONCOGENIC RAS PROTEINS
Descriptor: C-H-RAS P21 PROTEIN CATALYTIC DOMAIN, GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION
Authors:Kim, S.-H.
Deposit date:1991-09-25
Release date:1992-07-15
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2 Å)
Cite:Molecular switch for signal transduction: structural differences between active and inactive forms of protooncogenic ras proteins.
Science, 247, 1990

 

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