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5AYJ
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BU of 5ayj by Molmil
Hyperthermostable mutant of Bacillus sp. TB-90 Urate Oxidase - R298C
Descriptor: 9-METHYL URIC ACID, HEXAETHYLENE GLYCOL, SULFATE ION, ...
Authors:Hibi, T, Kume, A, Kawamura, A, Itoh, T, Nishiya, Y.
Deposit date:2015-08-21
Release date:2016-01-20
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Hyperstabilization of Tetrameric Bacillus sp. TB-90 Urate Oxidase by Introducing Disulfide Bonds through Structural Plasticity
Biochemistry, 55, 2016
1K2G
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BU of 1k2g by Molmil
Structural basis for the 3'-terminal guanosine recognition by the group I intron
Descriptor: 5'-R(*CP*AP*GP*AP*CP*UP*UP*CP*GP*GP*UP*CP*GP*CP*AP*GP*AP*GP*AP*UP*GP*G)-3'
Authors:Kitamura, Y, Muto, Y, Watanabe, S, Kim, I, Ito, T, Nishiya, Y, Sakamoto, K, Ohtsuki, T, Kawai, G, Watanabe, K, Hosono, K, Takaku, H, Katoh, E, Yamazaki, T, Inoue, T, Yokoyama, S.
Deposit date:2001-09-27
Release date:2002-05-08
Last modified:2022-02-23
Method:SOLUTION NMR
Cite:Solution structure of an RNA fragment with the P7/P9.0 region and the 3'-terminal guanosine of the tetrahymena group I intron.
RNA, 8, 2002
7CMQ
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BU of 7cmq by Molmil
Crystal Structure of Bacillus sp. TB-90 Urate Oxidase Improved by Humidity Control at 88% RH.
Descriptor: 1,2-ETHANEDIOL, 8-AZAXANTHINE, OXYGEN MOLECULE, ...
Authors:Hibi, T, Itoh, T, Nishiya, Y.
Deposit date:2020-07-28
Release date:2020-08-12
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Flexibility of a Distal Interface Loop Modulates Water Network in the Active Site of Bacillus sp. TB-90 Urate Oxidase
To be published
2ZK7
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BU of 2zk7 by Molmil
Structure of a C-terminal deletion mutant of Thermoplasma acidophilum aldohexose dehydrogenase (AldT)
Descriptor: Glucose 1-dehydrogenase related protein
Authors:Nishioka, T, Yasutake, Y, Nishiya, Y, Tamura, N, Tamura, T.
Deposit date:2008-03-12
Release date:2009-01-13
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.71 Å)
Cite:C-terminal tail derived from the neighboring subunit is critical for the activity of Thermoplasma acidophilum D-aldohexose dehydrogenase
Proteins, 74, 2009
1J2G
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BU of 1j2g by Molmil
Crystal structure of Urate oxidase from Bacillus SP. TB-90 co-crystallized with 8-Azaxanthine
Descriptor: 8-AZAXANTHINE, SULFATE ION, Uricase
Authors:Hibi, T, Nago, T, Nishiya, Y, Oda, J.
Deposit date:2003-01-05
Release date:2004-06-15
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of urate oxidase from Bacillus SP.
To be Published
2DTX
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BU of 2dtx by Molmil
Structure of Thermoplasma acidophilum aldohexose dehydrogenase (AldT) in complex with D-mannose
Descriptor: Glucose 1-dehydrogenase related protein, SULFATE ION, beta-D-mannopyranose
Authors:Yasutake, Y, Nishiya, Y, Tamura, N, Tamura, T.
Deposit date:2006-07-18
Release date:2007-03-27
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structural Insights into Unique Substrate Selectivity of Thermoplasma acidophilumd-Aldohexose Dehydrogenase
J.Mol.Biol., 367, 2007
2DTD
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BU of 2dtd by Molmil
Structure of Thermoplasma acidophilum aldohexose dehydrogenase (AldT) in ligand-free form
Descriptor: Glucose 1-dehydrogenase related protein, SULFATE ION
Authors:Yasutake, Y, Nishiya, Y, Tamura, N, Tamura, T.
Deposit date:2006-07-12
Release date:2007-03-27
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural Insights into Unique Substrate Selectivity of Thermoplasma acidophilumd-Aldohexose Dehydrogenase
J.Mol.Biol., 367, 2007
2DTE
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BU of 2dte by Molmil
Structure of Thermoplasma acidophilum aldohexose dehydrogenase (AldT) in complex with NADH
Descriptor: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, Glucose 1-dehydrogenase related protein
Authors:Yasutake, Y, Nishiya, Y, Tamura, N, Tamura, T.
Deposit date:2006-07-12
Release date:2007-03-27
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Structural Insights into Unique Substrate Selectivity of Thermoplasma acidophilumd-Aldohexose Dehydrogenase
J.Mol.Biol., 367, 2007
7BYA
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BU of 7bya by Molmil
Malate Dehydrogenase from Geobacillus stearothermophilus (gs-MDH) complexed with Oxaloacetic Acid (OAA) and Adenosine 5'-Diphosphoribose (APR)
Descriptor: ADENOSINE-5-DIPHOSPHORIBOSE, Malate dehydrogenase, OXALOACETATE ION
Authors:Shimozawa, Y, Nakamura, T, Himiyama, T, Nishiya, Y.
Deposit date:2020-04-22
Release date:2021-03-24
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural analysis and reaction mechanism of malate dehydrogenase from Geobacillus stearothermophilus.
J.Biochem., 170, 2021
7BY9
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BU of 7by9 by Molmil
Malate Dehydrogenase from Geobacillus stearothermophilus (gs-MDH) complexed with Oxaloacetic Acid (OAA) and Nicotinamide Adenine Dinucleotide (NAD)
Descriptor: Malate dehydrogenase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, OXALOACETATE ION
Authors:Shimozawa, Y, Nakamura, T, Himiyama, T, Nishiya, Y.
Deposit date:2020-04-22
Release date:2021-03-24
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural analysis and reaction mechanism of malate dehydrogenase from Geobacillus stearothermophilus.
J.Biochem., 170, 2021
7BY8
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BU of 7by8 by Molmil
Malate Dehydrogenase from Geobacillus stearothermophilus (gs-MDH)
Descriptor: Malate dehydrogenase
Authors:Shimozawa, Y, Nakamura, T, Himiyama, T, Nishiya, Y.
Deposit date:2020-04-22
Release date:2021-03-24
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.945 Å)
Cite:Structural analysis and reaction mechanism of malate dehydrogenase from Geobacillus stearothermophilus.
J.Biochem., 170, 2021
5Y52
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BU of 5y52 by Molmil
Crystal Structure of Highly Active BTUO Mutant P287G Improved by Humidity Control at 83% RH
Descriptor: 1,2-ETHANEDIOL, 8-AZAXANTHINE, OXYGEN MOLECULE, ...
Authors:Itoh, T, Kishimoto, T, Nishiya, Y.
Deposit date:2017-08-07
Release date:2018-08-08
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.63 Å)
Cite:Conformational Flexibility of Plastic Interface Loop Allows Entropic Adaptation of Urate Oxidase to Environmental pH
To Be Published
5YJ2
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BU of 5yj2 by Molmil
Crystal structure of Bacillus sp. TB-90 urate oxidase without dehydration
Descriptor: 2-METHOXYETHANOL, 8-AZAXANTHINE, OXYGEN MOLECULE, ...
Authors:Hibi, T, Itoh, T, Nishiya, Y.
Deposit date:2017-10-07
Release date:2018-10-10
Last modified:2018-12-19
Method:X-RAY DIFFRACTION (1.71 Å)
Cite:Crystal structure of Bacillus sp. TB-90 urate oxidase without dehydration
To Be Published
5Y2P
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BU of 5y2p by Molmil
Crystal Structure of Bacillus sp. TB-90 Urate Oxidase Improved by Humidity Control at 89% RH
Descriptor: 1,2-ETHANEDIOL, 8-AZAXANTHINE, OXYGEN MOLECULE, ...
Authors:Itoh, T, Nishiya, Y.
Deposit date:2017-07-26
Release date:2018-08-08
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Conformational Flexibility of Plastic Interface Loop Allows Entropic Adaptation of Urate Oxidase to Environmental pH.
To Be Published
5YJA
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BU of 5yja by Molmil
Crystal structure of highly active BTUO mutant P287G without dehydration
Descriptor: 2-METHOXYETHANOL, 8-AZAXANTHINE, OXYGEN MOLECULE, ...
Authors:Hibi, T, Itoh, T, Nishiya, Y.
Deposit date:2017-10-09
Release date:2018-10-10
Last modified:2018-12-19
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Flexibility of a Distal Interface Loop Modulates Water Network in the Active Site of Bacillus sp. TB-90 Urate Oxidase
to be published
5Z2B
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BU of 5z2b by Molmil
Crystal structure of highly active BTUO mutant P287G Improved by Humidity Control at 86% RH
Descriptor: 1,2-ETHANEDIOL, 8-AZAXANTHINE, CHLORIDE ION, ...
Authors:Hibi, T, Itoh, T, Nishiya, Y.
Deposit date:2018-01-02
Release date:2019-01-02
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.901 Å)
Cite:Flexibility of a Distal Interface Loop Modulates Water Network in the Active Site of Bacillus sp. TB-90 Urate Oxidase
to be published
5Z27
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BU of 5z27 by Molmil
Crystal structure of highly active BTUO mutant P287G without dehydration
Descriptor: 1,2-ETHANEDIOL, 8-AZAXANTHINE, OXYGEN MOLECULE, ...
Authors:Hibi, T, Itoh, T, Nishiya, Y.
Deposit date:2017-12-29
Release date:2019-01-02
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Flexibility of a Distal Interface Loop Modulates Water Network in the Active Site of Bacillus sp. TB-90 Urate Oxidase
to be published
7CMN
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BU of 7cmn by Molmil
Crystal Structure of Bacillus sp. TB-90 Urate Oxidase Improved by Humidity Control at 88% RH.
Descriptor: 1,2-ETHANEDIOL, 8-AZAXANTHINE, OXYGEN MOLECULE, ...
Authors:Hibi, T, Itoh, T, Nishiya, Y.
Deposit date:2020-07-28
Release date:2020-08-12
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.42 Å)
Cite:Flexibility of a Distal Interface Loop Modulates Water Network in the Active Site of Bacillus sp. TB-90 Urate Oxidase
To be published
7X1L
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BU of 7x1l by Molmil
Malate dehydrogenase from Geobacillus stearothermophilus (gs-MDH) delta E311 mutant complexed with Nicotinamide Adenine Dinucleotide (NAD+)
Descriptor: Malate dehydrogenase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
Authors:Shimozawa, Y, Himiyama, T, Nakamura, T, Nishiya, Y.
Deposit date:2022-02-24
Release date:2022-10-19
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.28 Å)
Cite:Reducing substrate inhibition of malate dehydrogenase from Geobacillus stearothermophilus by C-terminal truncation.
Protein Eng.Des.Sel., 35, 2022
3AUU
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BU of 3auu by Molmil
Crystal structure of Bacillus megaterium glucose dehydrogenase 4 in complex with D-glucose
Descriptor: Glucose 1-dehydrogenase 4, beta-D-glucopyranose
Authors:Nishioka, T, Yasutake, Y, Nishiya, Y, Tamura, T.
Deposit date:2011-02-16
Release date:2012-02-22
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure-guided mutagenesis for the improvement of substrate specificity of Bacillus megaterium glucose 1-dehydrogenase IV
Febs J., 279, 2012
3AUS
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BU of 3aus by Molmil
Crystal structure of Bacillus megaterium glucose dehydrogenase 4 in ligand-free form
Descriptor: Glucose 1-dehydrogenase 4
Authors:Nishioka, T, Yasutake, Y, Nishiya, Y, Tamura, T.
Deposit date:2011-02-16
Release date:2012-02-22
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure-guided mutagenesis for the improvement of substrate specificity of Bacillus megaterium glucose 1-dehydrogenase IV
Febs J., 279, 2012
3AY7
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BU of 3ay7 by Molmil
Crystal structure of Bacillus megaterium glucose dehydrogenase 4 G259A mutant
Descriptor: CHLORIDE ION, Glucose 1-dehydrogenase 4
Authors:Nishioka, T, Yasutake, Y, Nishiya, Y, Tamura, T.
Deposit date:2011-04-29
Release date:2012-05-23
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure-guided mutagenesis for the improvement of substrate specificity of Bacillus megaterium glucose 1-dehydrogenase IV
Febs J., 279, 2012
3AY6
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BU of 3ay6 by Molmil
Crystal structure of Bacillus megaterium glucose dehydrogenase 4 A258F mutant in complex with NADH and D-glucose
Descriptor: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, CHLORIDE ION, Glucose 1-dehydrogenase 4, ...
Authors:Nishioka, T, Yasutake, Y, Nishiya, Y, Tamura, T.
Deposit date:2011-04-29
Release date:2012-05-23
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structure-guided mutagenesis for the improvement of substrate specificity of Bacillus megaterium glucose 1-dehydrogenase IV
Febs J., 279, 2012
3AUT
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BU of 3aut by Molmil
Crystal structure of Bacillus megaterium glucose dehydrogenase 4 in complex with NADH
Descriptor: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, Glucose 1-dehydrogenase 4
Authors:Nishioka, T, Yasutake, Y, Nishiya, Y, Tamura, T.
Deposit date:2011-02-16
Release date:2012-02-22
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure-guided mutagenesis for the improvement of substrate specificity of Bacillus megaterium glucose 1-dehydrogenase IV
Febs J., 279, 2012
7F8D
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BU of 7f8d by Molmil
Malate Dehydrogenase from Geobacillus stearothermophilus (gs-MDH) G218Y mutant
Descriptor: Malate dehydrogenase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
Authors:Shimozawa, Y, Himiyama, T, Nakamura, T, Nishiya, Y.
Deposit date:2021-07-02
Release date:2022-02-23
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Increasing loop flexibility affords low-temperature adaptation of a moderate thermophilic malate dehydrogenase from Geobacillus stearothermophilus.
Protein Eng.Des.Sel., 34, 2021

 

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