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1EC4
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BU of 1ec4 by Molmil
SOLUTION STRUCTURE OF A HEXITOL NUCLEIC ACID DUPLEX WITH FOUR CONSECUTIVE T:T BASE PAIRS
Descriptor: HEXITOL DODECANUCLEOTIDE
Authors:Lescrinier, E, Esnouf, R.M, Schraml, J, Busson, R, Herdewijn, P.
Deposit date:2000-01-25
Release date:2003-04-22
Last modified:2022-02-16
Method:SOLUTION NMR
Cite:Solution structure of a HNA-RNA hybrid
Chem.Biol., 7, 2000
2G1G
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BU of 2g1g by Molmil
Solution structure of the anticodon loop of S. Pombe tRNAi including the naturally occurring N6-threonyl adenine
Descriptor: 5'-R(*AP*CP*GP*GP*GP*CP*UP*CP*AP*UP*(T6A)P*AP*CP*CP*CP*GP*U)-3'
Authors:Lescrinier, E.
Deposit date:2006-02-14
Release date:2006-06-20
Last modified:2022-03-09
Method:SOLUTION NMR
Cite:The naturally occurring N6-threonyl adenine in anticodon loop of Schizosaccharomyces pombe tRNAi causes formation of a unique U-turn motif
Nucleic Acids Res., 34, 2006
2KPC
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BU of 2kpc by Molmil
Structure determination of the top-loop of the conserved 3 terminal secondary structure in the genome of YFV
Descriptor: RNA (5'-R(*UP*GP*AP*GP*CP*AP*CP*AP*GP*UP*UP*UP*GP*CP*UP*CP*A)-3')
Authors:Lescrinier, E, Dyubankova, N, Nauwelaerts, K, Jones, R, Herdewijn, P.
Deposit date:2009-10-12
Release date:2010-06-30
Last modified:2022-03-16
Method:SOLUTION NMR
Cite:Structure Determination of the Top-Loop of the Conserved 3'-Terminal Secondary Structure in the Genome of Flaviviruses.
Chembiochem, 11, 2010
2KPD
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BU of 2kpd by Molmil
Structure determination of the top-loop of the conserved 3 terminal secondary structure in the genome of YFV-mutant
Descriptor: RNA (5'-R(*UP*GP*AP*GP*CP*UP*CP*AP*GP*UP*UP*UP*GP*CP*UP*CP*A)-3')
Authors:Lescrinier, E, Dyubankova, N, Nauwelaerts, K, Jones, R, Herdewijn, P.
Deposit date:2009-10-12
Release date:2010-06-30
Last modified:2022-03-16
Method:SOLUTION NMR
Cite:Structure Determination of the Top-Loop of the Conserved 3'-Terminal Secondary Structure in the Genome of Flaviviruses.
Chembiochem, 11, 2010
2M4W
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BU of 2m4w by Molmil
single G-bulge in a conserved regulatory region of the HEV genome
Descriptor: RNA (5'-R(*GP*GP*AP*AP*UP*CP*GP*AP*AP*AP*GP*AP*UP*GP*UP*CP*C)-3')
Authors:Lescrinier, E.
Deposit date:2013-02-11
Release date:2014-03-05
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Binding of a naphtyridine analogue to the single G-bulge in a conserved regulatory region of the HEV genome
To be Published
2MN0
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BU of 2mn0 by Molmil
D loop of tRNA(Met)
Descriptor: 5'-R(*GP*GP*AP*GP*AP*GP*(H2U)P*GP*GP*AP*AP*CP*UP*CP*C)-3'
Authors:Lescrinier, E, Dyubankova, N, Herdewijn, P.
Deposit date:2014-03-25
Release date:2015-04-15
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Contribution of dihydrouridine in folding of the D-arm in tRNA.
Org.Biomol.Chem., 13, 2015
1U01
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BU of 1u01 by Molmil
High resolution NMR structure of 5-d(GCGT*GCG)-3/5-d(CGCACGC)-3 (T*represents a cyclohexenyl nucleotide)
Descriptor: 5'-D(*CP*GP*CP*AP*CP*GP*C)-3', 5'-D(*GP*CP*GP*(XTR)P*GP*CP*G)-3'
Authors:Nauwelaerts, K, Lescrinier, E, Sclep, G, Herdewijn, P.
Deposit date:2004-07-12
Release date:2005-05-31
Last modified:2022-03-02
Method:SOLUTION NMR
Cite:Cyclohexenyl nucleic acids: conformationally flexible oligonucleotides.
Nucleic Acids Res., 33, 2005
1QXB
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BU of 1qxb by Molmil
NMR structure determination of the self complementary DNA Dodecamer CGCGAATT*CGCG in which a ribose is inserted between the 3'-OH of T8 and the 5'-phosphate group of C9
Descriptor: 5'-d(CpGpCpGpApApTpTpCpGpCpG)-3', beta-D-ribofuranose
Authors:Nauwelaerts, K, Vastmans, K, Froeyen, M, Kempeneers, V, Rozenski, J, Rosemeyer, H, Van Aerschot, A, Busson, R, Efimtseva, E, Mikhailov, S, Lescrinier, E, Herdewijn, P.
Deposit date:2003-09-05
Release date:2004-02-03
Last modified:2020-07-29
Method:SOLUTION NMR
Cite:Cleavage of DNA without loss of genetic information by incorporation of a disaccharide nucleoside.
Nucleic Acids Res., 31, 2003
2LER
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BU of 2ler by Molmil
Conotoxin pc16a
Descriptor: Conotoxin pc16a
Authors:Dyubankova, N, Lescrinier, E, Van Der Haegen, A, Peigneur, S, Tytgat, J.
Deposit date:2011-06-22
Release date:2012-04-11
Last modified:2012-04-18
Method:SOLUTION NMR
Cite:Pc16a, the first characterized peptide from Conus pictus venom, shows a novel disulfide connectivity.
Peptides, 34, 2012
2MSF
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BU of 2msf by Molmil
NMR SOLUTION STRUCTURE OF SCORPION VENOM TOXIN Ts11 (TsPep1) FROM Tityus serrulatus
Descriptor: Peptide TsPep1
Authors:Maiti, M, Lescrinier, E, Herdewijn, P, Cremonez, C.M, Peigneur, S, Cassoli, J.S, Dutra, A.A.A, Waelkens, E, Pimenta, A.M.C, De Lima, M.H, Tytgat, J, Arantes, E.C.
Deposit date:2014-08-01
Release date:2015-08-26
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Structural and Functional Elucidation of Peptide Ts11 Shows Evidence of a Novel Subfamily of Scorpion Venom Toxins.
Toxins (Basel), 8, 2016
7BFX
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BU of 7bfx by Molmil
deoxyxylose nucleic acid hairpin
Descriptor: dXyNA (5'-D(*(XA)P*(XG)P*(XC)P*(XA)P*(XA)P*(XT)P*(XC)P*(XC)P*(XC)P*(XC)P*(XC)P*(XC)P*(XG)P*(XG)P*(XA)P*(XT)P*(XT)P*(XG)P*(XC)P*T)-3')
Authors:Mattelaer, C.-A, Mohitosh, M, Smets, L, Maiti, M, Schepers, G, Mattelaer, H.-P, Rosemeyer, H, Herdewijn, P, Lescrinier, E.
Deposit date:2021-01-05
Release date:2021-01-27
Last modified:2024-01-31
Method:SOLUTION NMR
Cite:Stable Hairpin Structures Formed by Xylose-Based Nucleic Acids.
Chembiochem, 22, 2021
7BFS
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BU of 7bfs by Molmil
deoxyxylose nucleic acid hairpin
Descriptor: DNA (5'-D(*AP*GP*CP*AP*AP*TP*CP*CP*(XC)P*(XC)P*(XC)P*(XC)P*GP*GP*AP*TP*TP*GP*CP*T)-3')
Authors:Mattelaer, C.-A, Mohitosh, M, Smets, L, Maiti, M, Schepers, G, Mattelaer, H.-P, Rosemeyer, H, Herdewijn, P, Lescrinier, E.
Deposit date:2021-01-04
Release date:2021-01-27
Last modified:2021-05-12
Method:SOLUTION NMR
Cite:Stable Hairpin Structures Formed by Xylose-Based Nucleic Acids.
Chembiochem, 22, 2021
2MD6
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BU of 2md6 by Molmil
NMR SOLUTION STRUCTURE OF ALPHA CONOTOXIN LO1A FROM Conus longurionis
Descriptor: ALPHA CONOTOXIN LO1A
Authors:Maiti, M, Lescrinier, E, Herdewijn, P, Lebbe, E.K.M, Peigneur, S, D'Souza, L, Tytgat, J.
Deposit date:2013-09-01
Release date:2014-03-05
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Structure-Function Elucidation of a New alpha-Conotoxin, Lo1a, from Conus longurionis.
J.Biol.Chem., 289, 2014
2LU6
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BU of 2lu6 by Molmil
NMR solution structure of Midi peptide designed based on m-conotoxins
Descriptor: Midi peptide designed based on m-conotoxins
Authors:Dyubankova, N, Lescrinier, E, Stevens, M, Tytgat, J, Herdewijn, P, Peigneur, S.
Deposit date:2012-06-08
Release date:2012-06-27
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Design of bioactive peptides from naturally occurring mu-conotoxin structures.
J.Biol.Chem., 287, 2012
2N4J
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BU of 2n4j by Molmil
Solution structure of a self complementary Xylonucleic Acid duplex
Descriptor: XNA (5'-R(*(8XG)P*(8XU)P*(8XG)P*(8XU)P*(8XA)P*(8XC)P*(8XA)P*(8XC))-3')
Authors:Maiti, M, Lescrinier, E, Herdewijn, P.
Deposit date:2015-06-19
Release date:2015-07-29
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Xylonucleic acid: synthesis, structure, and orthogonal pairing properties.
Nucleic Acids Res., 43, 2015
1EJZ
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BU of 1ejz by Molmil
SOLUTION STRUCTURE OF A HNA-RNA HYBRID
Descriptor: DNA (5'-H(*(6HG)P*(6HC)P*(6HG)P*(6HT)P*(6HA)P*(6HG)P*(6HC)P*(6HG))-3'), PHOSPHORIC ACID MONO-(3-HYDROXY-PROPYL) ESTER, RNA (5'-R(*CP*GP*CP*UP*AP*CP*GP*C)-3')
Authors:Lescrnier, E, Esnouf, R, Heus, H.A, Hilbers, C.W, Herdewijn, P.
Deposit date:2000-03-06
Release date:2000-10-23
Last modified:2022-02-16
Method:SOLUTION NMR
Cite:Solution structure of a HNA-RNA hybrid.
Chem.Biol., 7, 2000
2BJ6
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BU of 2bj6 by Molmil
Crystal Structure of a decameric HNA-RNA hybrid
Descriptor: 5'-R(*GP*GP*CP*AP*UP*UP*AP*CP*GP*GP)-3', SULFATE ION, SYNTHETIC HNA
Authors:Maier, T, Przylas, I, Straeter, N, Herdewijn, P, Saenger, W.
Deposit date:2005-01-30
Release date:2005-03-09
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Reinforced Hna Backbone Hydration in the Crystal Structure of a Decameric Hna/RNA Hybrid
J.Am.Chem.Soc., 127, 2005
6I3B
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BU of 6i3b by Molmil
Crystal structure of cPizza6-AYW, a circularly permuted designer protein
Descriptor: cPizza6-AYW
Authors:Mylemans, B, Noguchi, H, Deridder, E, Voet, A.R.D.
Deposit date:2018-11-05
Release date:2019-11-20
Last modified:2020-10-21
Method:X-RAY DIFFRACTION (1 Å)
Cite:Influence of circular permutations on the structure and stability of a six-fold circular symmetric designer protein.
Protein Sci., 2020
6I37
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BU of 6i37 by Molmil
Crystal structure of nv1Pizza6-AYW, a circularly permuted designer protein
Descriptor: SULFATE ION, nv1Pizza6-AYW
Authors:Mylemans, B, Noguchi, H, Deridder, E, Voet, A.R.D.
Deposit date:2018-11-05
Release date:2019-11-20
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.54 Å)
Cite:Influence of circular permutations on the structure and stability of a six-fold circular symmetric designer protein.
Protein Sci., 2020
6I39
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BU of 6i39 by Molmil
Crystal structure of v31Pizza6-AYW, a circularly permuted designer protein
Descriptor: MAGNESIUM ION, v31Pizza6-AYW
Authors:Mylemans, B, Noguchi, H, Deridder, E, Voet, A.R.D.
Deposit date:2018-11-05
Release date:2019-11-20
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.05 Å)
Cite:Influence of circular permutations on the structure and stability of a six-fold circular symmetric designer protein.
Protein Sci., 2020
6I38
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BU of 6i38 by Molmil
Crystal structure of nv2Pizza6-AYW, a circularly permuted designer protein
Descriptor: nv2Pizza6-AYW
Authors:Mylemans, B, Noguchi, H, Deridder, E, Voet, A.R.D.
Deposit date:2018-11-05
Release date:2019-11-20
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.58 Å)
Cite:Influence of circular permutations on the structure and stability of a six-fold circular symmetric designer protein.
Protein Sci., 2020
6I3A
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BU of 6i3a by Molmil
Crystal structure of v22Pizza6-AYW, a circularly permuted designer protein
Descriptor: BROMIDE ION, v22Pizza6-AYW
Authors:Mylemans, B, Noguchi, H, Deridder, E, Voet, A.R.D.
Deposit date:2018-11-05
Release date:2019-11-20
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Influence of circular permutations on the structure and stability of a six-fold circular symmetric designer protein.
Protein Sci., 2020
6TBC
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BU of 6tbc by Molmil
Crystal structure of S. aureus FabI in complex with NADPH and kalimantacin B
Descriptor: (2~{E},5~{R},10~{E},12~{E},15~{S},19~{R})-20-[[(2~{R},3~{R})-3-aminocarbonyloxy-2-methyl-butanoyl]amino]-3,5,15-trimethyl-7-methylidene-19-oxidanyl-17-oxidanylidene-icosa-2,10,12-trienoic acid, Enoyl-[acyl-carrier-protein] reductase [NADPH], NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Fage, C.D, Masschelein, J.
Deposit date:2019-11-01
Release date:2020-04-01
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:The Kalimantacin Polyketide Antibiotics Inhibit Fatty Acid Biosynthesis in Staphylococcus aureus by Targeting the Enoyl-Acyl Carrier Protein Binding Site of FabI.
Angew.Chem.Int.Ed.Engl., 59, 2020
6TBB
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BU of 6tbb by Molmil
Crystal structure of S. aureus FabI in complex with NADPH and kalimantacin A (batumin)
Descriptor: Enoyl-[acyl-carrier-protein] reductase [NADPH], Kalimantacin, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Fage, C.D, Masschelein, J.
Deposit date:2019-11-01
Release date:2020-04-01
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:The Kalimantacin Polyketide Antibiotics Inhibit Fatty Acid Biosynthesis in Staphylococcus aureus by Targeting the Enoyl-Acyl Carrier Protein Binding Site of FabI.
Angew.Chem.Int.Ed.Engl., 59, 2020
7AP3
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BU of 7ap3 by Molmil
Crystal structure of E. coli tyrosyl-tRNA synthetase in complex with TyrS7HMDDA
Descriptor: SODIUM ION, Tyrosine--tRNA ligase, [(2~{R},3~{S},4~{R},5~{R})-5-[7-azanyl-5-(hydroxymethyl)benzimidazol-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl ~{N}-[(2~{S})-2-azanyl-3-(4-hydroxyphenyl)propanoyl]sulfamate
Authors:De Graef, S, Pang, L, Strelkov, S.V, Weeks, S.D.
Deposit date:2020-10-15
Release date:2020-10-28
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2 Å)
Cite:Synthesis and Biological Evaluation of 1,3-Dideazapurine-Like 7-Amino-5-Hydroxymethyl-Benzimidazole Ribonucleoside Analogues as Aminoacyl-tRNA Synthetase Inhibitors.
Molecules, 25, 2020

 

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