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1AJJ
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BU of 1ajj by Molmil
LDL RECEPTOR LIGAND-BINDING MODULE 5, CALCIUM-COORDINATING
Descriptor: CALCIUM ION, LOW-DENSITY LIPOPROTEIN RECEPTOR, SULFATE ION
Authors:Fass, D, Blacklow, S.C, Kim, P.S, Berger, J.M.
Deposit date:1997-05-04
Release date:1997-07-07
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Molecular basis of familial hypercholesterolaemia from structure of LDL receptor module.
Nature, 388, 1997
1AIK
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BU of 1aik by Molmil
HIV GP41 CORE STRUCTURE
Descriptor: HIV-1 GP41 GLYCOPROTEIN
Authors:Chan, D.C, Fass, D, Berger, J.M, Kim, P.S.
Deposit date:1997-04-20
Release date:1997-06-16
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Core structure of gp41 from the HIV envelope glycoprotein.
Cell(Cambridge,Mass.), 89, 1997
1AOL
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BU of 1aol by Molmil
FRIEND MURINE LEUKEMIA VIRUS RECEPTOR-BINDING DOMAIN
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, GP70, ZINC ION
Authors:Fass, D, Davey, R.A, Hamson, C.A, Kim, P.S, Cunningham, J.M, Berger, J.M.
Deposit date:1997-07-08
Release date:1997-10-15
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure of a murine leukemia virus receptor-binding glycoprotein at 2.0 angstrom resolution.
Science, 277, 1997
1GCM
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BU of 1gcm by Molmil
GCN4 LEUCINE ZIPPER CORE MUTANT P-LI
Descriptor: GCN4P-II
Authors:Harbury, P.B, Kim, P.S, Alber, T.
Deposit date:1995-04-25
Release date:1996-01-29
Last modified:2021-11-03
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of an isoleucine-zipper trimer.
Nature, 371, 1994
1GCL
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BU of 1gcl by Molmil
GCN4 LEUCINE ZIPPER CORE MUTANT P-LI
Descriptor: GCN4
Authors:Harbury, P.B, Zhang, T, Kim, P.S, Alber, T.
Deposit date:1993-10-20
Release date:1995-06-03
Last modified:2013-04-24
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:A switch between two-, three-, and four-stranded coiled coils in GCN4 leucine zipper mutants.
Science, 262, 1993
2ZTA
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BU of 2zta by Molmil
X-RAY STRUCTURE OF THE GCN4 LEUCINE ZIPPER, A TWO-STRANDED, PARALLEL COILED COIL
Descriptor: GCN4 LEUCINE ZIPPER
Authors:O'Shea, E.K, Klemm, J.D, Kim, P.S, Alber, T.
Deposit date:1991-07-05
Release date:1992-10-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:X-ray structure of the GCN4 leucine zipper, a two-stranded, parallel coiled coil.
Science, 254, 1991
2EBO
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BU of 2ebo by Molmil
CORE STRUCTURE OF GP2 FROM EBOLA VIRUS
Descriptor: CHLORIDE ION, EBOLA VIRUS ENVELOPE GLYCOPROTEIN
Authors:Malashkevich, V.N, Schneider, B.J, Mcnally, M.L, Milhollen, M.A, Pang, J.X, Kim, P.S.
Deposit date:1998-12-24
Release date:1999-05-18
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Core structure of the envelope glycoprotein GP2 from Ebola virus at 1.9-A resolution.
Proc.Natl.Acad.Sci.USA, 96, 1999
2Q5U
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BU of 2q5u by Molmil
Crystal structure of IQN17
Descriptor: CHLORIDE ION, Fusion protein between yeast variant GCN4 and HIVgp41
Authors:Malashkevich, V.N, Eckert, D.M, Hong, L.H, Kim, P.S.
Deposit date:2007-06-01
Release date:2007-06-12
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Inhibiting HIV Entry: Discovery of D-Peptide Inhibitors that Target the Gp41 Coiled-Coil Pocket
Cell(Cambridge,Mass.), 99, 1999
2Q7C
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Crystal structure of IQN17
Descriptor: CHLORIDE ION, fusion protein between yeast variant GCN4 and HIVgp41
Authors:Malashkevich, V.N, Eckert, D.M, Hong, L.H, Kim, P.S.
Deposit date:2007-06-06
Release date:2007-06-19
Last modified:2017-10-18
Method:X-RAY DIFFRACTION (2 Å)
Cite:Inhibiting HIV Entry: Discovery of D-Peptide Inhibitors that Target the Gp41 Coiled-Coil Pocket
Cell(Cambridge,Mass.), 99, 1999
2Q3I
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BU of 2q3i by Molmil
Crystal structure of the D10-P3/IQN17 complex: a D-peptide inhibitor of HIV-1 entry bound to the GP41 coiled-coil pocket
Descriptor: CHLORIDE ION, D-peptide, Fusion protein between the Coiled-Coil pocket of HIV GP41 and gcn4-PIQI
Authors:Malashkevich, V.N, Eckert, D.M, Hong, L.H, Carr, P.A, Kim, P.S.
Deposit date:2007-05-30
Release date:2007-06-12
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Inhibiting HIV Entry: Discovery of D-Peptide Inhibitors that Target the Gp41 Coiled-Coil Pocket
Cell(Cambridge,Mass.), 99, 1999
1TGG
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BU of 1tgg by Molmil
RH3 DESIGNED RIGHT-HANDED COILED COIL TRIMER
Descriptor: CHLORIDE ION, NICKEL (II) ION, right-handed coiled coil trimer
Authors:Plecs, J.J, Harbury, P.B, Kim, P.S, Alber, T.
Deposit date:2004-05-28
Release date:2004-10-12
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural test of the parameterized-backbone method for protein design
J.Mol.Biol., 342, 2004
1IJ1
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BU of 1ij1 by Molmil
GCN4-pVLT Coiled-coil Trimer with Threonine at the d(12) Position
Descriptor: GENERAL CONTROL PROTEIN GCN4, ZINC ION
Authors:Akey, D.L, Malashkevich, V.N, Kim, P.S.
Deposit date:2001-04-24
Release date:2001-08-08
Last modified:2021-10-27
Method:X-RAY DIFFRACTION (1.86 Å)
Cite:Buried polar residues in coiled-coil interfaces.
Biochemistry, 40, 2001
1JEK
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BU of 1jek by Molmil
Visna TM CORE STRUCTURE
Descriptor: ENV POLYPROTEIN
Authors:Malashkevich, V.N, Singh, M, Kim, P.S.
Deposit date:2001-06-18
Release date:2001-07-25
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:The trimer-of-hairpins motif in membrane fusion: Visna virus.
Proc.Natl.Acad.Sci.USA, 98, 2001
2SIV
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BU of 2siv by Molmil
SIV GP41 CORE STRUCTURE
Descriptor: SIV GP41 GLYCOPROTEIN
Authors:Malashkevich, V.N, Chan, D.C, Chutkowski, C.T, Kim, P.S.
Deposit date:1998-06-17
Release date:1998-08-19
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of the simian immunodeficiency virus (SIV) gp41 core: conserved helical interactions underlie the broad inhibitory activity of gp41 peptides.
Proc.Natl.Acad.Sci.USA, 95, 1998
1CZQ
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BU of 1czq by Molmil
CRYSTAL STRUCTURE OF THE D10-P1/IQN17 COMPLEX: A D-PEPTIDE INHIBITOR OF HIV-1 ENTRY BOUND TO THE GP41 COILED-COIL POCKET.
Descriptor: CHLORIDE ION, D-PEPTIDE INHIBITOR, FUSION PROTEIN BETWEEN THE HYDROPHOBIC POCKET OF HIV GP41 AND GCN4-PIQI
Authors:Eckert, D.M, Malashkevich, V.N, Hong, L.H, Carr, P.A, Kim, P.S.
Deposit date:1999-09-06
Release date:1999-10-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Inhibiting HIV-1 entry: discovery of D-peptide inhibitors that target the gp41 coiled-coil pocket.
Cell(Cambridge,Mass.), 99, 1999
8F3B
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BU of 8f3b by Molmil
HIV-1 gp41 coiled-coil pocket IQN22
Descriptor: IQN22
Authors:Bruun, T.U.J, Tang, S, Fernandez, D, Kim, P.S.
Deposit date:2022-11-09
Release date:2023-03-08
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure-guided stabilization improves the ability of the HIV-1 gp41 hydrophobic pocket to elicit neutralizing antibodies.
J.Biol.Chem., 299, 2023
8F3A
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BU of 8f3a by Molmil
HIV-1 gp41 coiled-coil pocket IQN17
Descriptor: ACETIC ACID, CHLORIDE ION, IQN17
Authors:Bruun, T.U.J, Tang, S, Fernandez, D, Kim, P.S.
Deposit date:2022-11-09
Release date:2023-03-08
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Structure-guided stabilization improves the ability of the HIV-1 gp41 hydrophobic pocket to elicit neutralizing antibodies.
J.Biol.Chem., 299, 2023
1G2C
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BU of 1g2c by Molmil
HUMAN RESPIRATORY SYNCYTIAL VIRUS FUSION PROTEIN CORE
Descriptor: FUSION PROTEIN (F)
Authors:Zhao, X, Singh, M, Malashkevich, V.N, Kim, P.S.
Deposit date:2000-10-18
Release date:2001-01-03
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural characterization of the human respiratory syncytial virus fusion protein core.
Proc.Natl.Acad.Sci.USA, 97, 2000
7UX0
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BU of 7ux0 by Molmil
Human Sperm TMEM95 Ectodomain
Descriptor: Sperm-egg fusion protein TMEM95, TRIETHYLENE GLYCOL, beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose
Authors:Tang, S, Kim, P.S.
Deposit date:2022-05-04
Release date:2022-10-12
Method:X-RAY DIFFRACTION (1.49 Å)
Cite:Human sperm TMEM95 binds eggs and facilitates membrane fusion.
Proc.Natl.Acad.Sci.USA, 119, 2022
1RH4
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BU of 1rh4 by Molmil
RH4 DESIGNED RIGHT-HANDED COILED COIL TETRAMER
Descriptor: ISOPROPYL ALCOHOL, RIGHT-HANDED COILED COIL TETRAMER
Authors:Harbury, P.B, Plecs, J.J, Tidor, B, Alber, T, Kim, P.S.
Deposit date:1998-10-07
Release date:1998-12-02
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:High-resolution protein design with backbone freedom.
Science, 282, 1998
6UMV
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BU of 6umv by Molmil
Human apo PD-1 double mutant
Descriptor: CHLORIDE ION, Programmed cell death protein 1
Authors:Tang, S, Kim, P.S.
Deposit date:2019-10-10
Release date:2019-11-27
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.424 Å)
Cite:A high-affinity human PD-1/PD-L2 complex informs avenues for small-molecule immune checkpoint drug discovery.
Proc.Natl.Acad.Sci.USA, 116, 2019
6UMT
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BU of 6umt by Molmil
High-affinity human PD-1 PD-L2 complex
Descriptor: MAGNESIUM ION, Programmed cell death 1 ligand 2, Programmed cell death protein 1
Authors:Tang, S, Kim, P.S.
Deposit date:2019-10-10
Release date:2019-11-27
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.986 Å)
Cite:A high-affinity human PD-1/PD-L2 complex informs avenues for small-molecule immune checkpoint drug discovery.
Proc.Natl.Acad.Sci.USA, 116, 2019
6UMU
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BU of 6umu by Molmil
Human apo PD-1 triple mutant
Descriptor: CHLORIDE ION, Programmed cell death protein 1
Authors:Tang, S, Kim, P.S.
Deposit date:2019-10-10
Release date:2019-11-27
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.183 Å)
Cite:A high-affinity human PD-1/PD-L2 complex informs avenues for small-molecule immune checkpoint drug discovery.
Proc.Natl.Acad.Sci.USA, 116, 2019
1GZL
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BU of 1gzl by Molmil
Crystal structure of C14linkmid/IQN17: a cross-linked inhibitor of HIV-1 entry bound to the gp41 hydrophobic pocket
Descriptor: CHLORIDE ION, ENVELOPE GLYCOPROTEIN GP41, FUSION PROTEIN BETWEEN THE HYDROPHOBIC POCKET OF HIV GP41 AND GENERAL CONTROL PROTEIN GCN4-PIQI, ...
Authors:Sia, S.K, Carr, P.A, Cochran, A.G, Malashkevich, V.M, Kim, P.S.
Deposit date:2002-05-23
Release date:2002-10-10
Last modified:2019-11-20
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Short Constrained Peptides that Inhibit HIV-1 Entry
Proc.Natl.Acad.Sci.USA, 99, 2002
1IJ3
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GCN4-pVSL Coiled-coil trimer with Serine at the a(16) position
Descriptor: general control protein GCN4
Authors:Akey, D.L, Malashkevich, V.N, Kim, P.S.
Deposit date:2001-04-24
Release date:2001-08-08
Last modified:2021-10-27
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Buried polar residues in coiled-coil interfaces.
Biochemistry, 40, 2001

 

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