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4FZ2
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BU of 4fz2 by Molmil
Crystal structure of the fourth type of archaeal tRNA splicing endonuclease from Candidatus Micrarchaeum acidiphilum ARMAN-2
Descriptor: tRNA intron endonuclease
Authors:Hirata, A, Fujishima, K, Yamagami, R, Kawamura, T, Banfiled, J.F, Kanai, A, Hori, H.
Deposit date:2012-07-06
Release date:2012-09-12
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.252 Å)
Cite:X-ray structure of the fourth type of archaeal tRNA splicing endonuclease: insights into the evolution of a novel three-unit composition and a unique loop involved in broad substrate specificity
Nucleic Acids Res., 40, 2012
3P1Z
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BU of 3p1z by Molmil
Crystal structure of the Aperopyrum pernix RNA splicing endonuclease
Descriptor: Putative uncharacterized protein, tRNA-splicing endonuclease
Authors:Hirata, A.
Deposit date:2010-10-01
Release date:2011-08-10
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Cleavage of intron from the standard or non-standard position of the precursor tRNA by the splicing endonuclease of Aeropyrum pernix, a hyper-thermophilic Crenarchaeon, involves a novel RNA recognition site in the Crenarchaea specific loop
Nucleic Acids Res., 39, 2011
3P1Y
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BU of 3p1y by Molmil
Crystal structure of the chimeric Archaeoglobus fulgidus RNA splicing endonuclease with the broadest substrate specificity
Descriptor: tRNA-splicing endonuclease
Authors:Hirata, A.
Deposit date:2010-10-01
Release date:2011-08-10
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Cleavage of intron from the standard or non-standard position of the precursor tRNA by the splicing endonuclease of Aeropyrum pernix, a hyper-thermophilic Crenarchaeon, involves a novel RNA recognition site in the Crenarchaea specific loop
Nucleic Acids Res., 39, 2011
1Q6D
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BU of 1q6d by Molmil
Crystal structure of Soybean Beta-Amylase Mutant (M51T) with Increased pH Optimum
Descriptor: SULFATE ION, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose, alpha-D-glucopyranose-(1-4)-beta-D-glucopyranose, ...
Authors:Hirata, A, Adachi, M, Sekine, A, Kang, Y.N, Utsumi, S, Mikami, B.
Deposit date:2003-08-13
Release date:2004-02-24
Last modified:2021-11-10
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural and Enzymatic Analysis of Soybean {beta}-Amylase Mutants with Increased pH Optimum
J.Biol.Chem., 279, 2004
1Q6C
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BU of 1q6c by Molmil
Crystal Structure of Soybean Beta-Amylase Complexed with Maltose
Descriptor: SULFATE ION, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose, beta-amylase
Authors:Hirata, A, Adachi, M, Sekine, A, Kang, Y.N, Utsumi, S, Mikami, B.
Deposit date:2003-08-13
Release date:2004-02-24
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.86 Å)
Cite:Structural and Enzymatic Analysis of Soybean {beta}-Amylase Mutants with Increased pH Optimum
J.Biol.Chem., 279, 2004
1Q6E
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BU of 1q6e by Molmil
Crystal Structure of Soybean Beta-Amylase Mutant (E178Y) with Increased pH Optimum at pH 5.4
Descriptor: SULFATE ION, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose, alpha-D-glucopyranose-(1-4)-beta-D-glucopyranose, ...
Authors:Hirata, A, Adachi, M, Sekine, A, Kang, Y.N, Utsumi, S, Mikami, B.
Deposit date:2003-08-13
Release date:2004-02-24
Last modified:2021-11-10
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Structural and Enzymatic Analysis of Soybean {beta}-Amylase Mutants with Increased pH Optimum
J.Biol.Chem., 279, 2004
1Q6G
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BU of 1q6g by Molmil
Crystal Structure of Soybean Beta-Amylase Mutant (N340T) with Increased pH Optimum
Descriptor: SULFATE ION, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose, alpha-D-glucopyranose-(1-4)-beta-D-glucopyranose, ...
Authors:Hirata, A, Adachi, M, Sekine, A, Kang, Y.N, Utsumi, S, Mikami, B.
Deposit date:2003-08-13
Release date:2004-02-24
Last modified:2021-11-10
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural and Enzymatic Analysis of Soybean {beta}-Amylase Mutants with Increased pH Optimum
J.Biol.Chem., 279, 2004
1Q6F
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BU of 1q6f by Molmil
Crystal Structure of Soybean Beta-Amylase Mutant (E178Y) with Increased pH Optimum at pH 7.1
Descriptor: SULFATE ION, alpha-D-glucopyranose-(1-4)-beta-D-glucopyranose, beta-D-glucopyranose-(1-4)-beta-D-glucopyranose, ...
Authors:Hirata, A, Adachi, M, Sekine, A, Kang, Y.N, Utsumi, S, Mikami, B.
Deposit date:2003-08-13
Release date:2004-02-24
Last modified:2021-11-10
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural and Enzymatic Analysis of Soybean {beta}-Amylase Mutants with Increased pH Optimum
J.Biol.Chem., 279, 2004
2PA8
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BU of 2pa8 by Molmil
X-Ray Crystal Structure of the D/L Subcomplex of the Sulfolobus Solfataricus RNA polymerase
Descriptor: DNA-directed RNA polymerase subunit D, DNA-directed RNA polymerase subunit L, FE3-S4 CLUSTER, ...
Authors:Hirata, A, Murakami, K.S.
Deposit date:2007-03-27
Release date:2008-02-05
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.76 Å)
Cite:The X-ray crystal structure of RNA polymerase from Archaea.
Nature, 451, 2008
1VEO
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BU of 1veo by Molmil
Crystal Structure Analysis of Y164F/maltose of Bacillus cereus Beta-Amylase at pH 4.6
Descriptor: Beta-amylase, CALCIUM ION, alpha-D-glucopyranose, ...
Authors:Hirata, A, Adachi, M, Utsumi, S, Mikami, B.
Deposit date:2004-04-03
Release date:2005-05-24
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.12 Å)
Cite:Engineering of the pH optimum of Bacillus cereus beta-amylase: conversion of the pH optimum from a bacterial type to a higher-plant type
Biochemistry, 43, 2004
1VEP
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BU of 1vep by Molmil
Crystal Structure Analysis of Triple (T47M/Y164E/T328N)/maltose of Bacillus cereus Beta-Amylase at pH 6.5
Descriptor: Beta-amylase, CALCIUM ION, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose, ...
Authors:Hirata, A, Adachi, M, Utsumi, S, Mikami, B.
Deposit date:2004-04-03
Release date:2005-05-24
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.06 Å)
Cite:Engineering of the pH optimum of Bacillus cereus beta-amylase: conversion of the pH optimum from a bacterial type to a higher-plant type
Biochemistry, 43, 2004
1VEM
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BU of 1vem by Molmil
Crystal Structure Analysis of Bacillus Cereus Beta-Amylase at the optimum pH (6.5)
Descriptor: Beta-amylase, CALCIUM ION, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose
Authors:Hirata, A, Adachi, M, Utsumi, S, Mikami, B.
Deposit date:2004-04-03
Release date:2005-05-24
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Engineering of the pH optimum of Bacillus cereus beta-amylase: conversion of the pH optimum from a bacterial type to a higher-plant type
Biochemistry, 43, 2004
1VEN
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BU of 1ven by Molmil
Crystal Structure Analysis of Y164E/maltose of Bacilus cereus Beta-amylase at pH 4.6
Descriptor: Beta-amylase, CALCIUM ION, alpha-D-glucopyranose
Authors:Hirata, A, Adachi, M, Utsumi, S, Mikami, B.
Deposit date:2004-04-03
Release date:2005-05-24
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.02 Å)
Cite:Engineering of the pH optimum of Bacillus cereus beta-amylase: conversion of the pH optimum from a bacterial type to a higher-plant type
Biochemistry, 43, 2004
6JP6
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BU of 6jp6 by Molmil
The X-ray structure of yeast tRNA methyltransferase complex of Trm7 and Trm734 essential for 2'-O-methylation at the first position of anticodon in specific tRNAs
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, SULFATE ION, tRNA (cytidine(34)/guanosine(34)-2'-O)-methyltransferase, ...
Authors:Hirata, A, Okada, K, Yoshii, K, Shiraisi, H, Saijo, S, Yonezawa, K, Sihimzu, N, Hori, H.
Deposit date:2019-03-26
Release date:2019-10-02
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.699 Å)
Cite:Structure of tRNA methyltransferase complex of Trm7 and Trm734 reveals a novel binding interface for tRNA recognition.
Nucleic Acids Res., 47, 2019
5E71
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BU of 5e71 by Molmil
Crystal structure of the archaeal tRNA m2G/m22G10 methyltransferase (aTrm11) from Thermococcus kodakarensis
Descriptor: N2, N2-dimethylguanosine tRNA methyltransferase
Authors:Hirata, A.
Deposit date:2015-10-11
Release date:2016-07-06
Last modified:2020-02-19
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural and functional analyses of the archaeal tRNA m2G/m22G10 methyltransferase aTrm11 provide mechanistic insights into site specificity of a tRNA methyltransferase that contains common RNA-binding modules.
Nucleic Acids Res., 2016
5E72
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BU of 5e72 by Molmil
Crystal structure of the archaeal tRNA m2G/m22G10 methyltransferase (aTrm11) in complex with S-adenosyl-L-methionine (SAM) from Thermococcus kodakarensis
Descriptor: N2, N2-dimethylguanosine tRNA methyltransferase, S-ADENOSYLMETHIONINE
Authors:Hirata, A.
Deposit date:2015-10-11
Release date:2016-07-06
Last modified:2020-02-19
Method:X-RAY DIFFRACTION (1.739 Å)
Cite:Structural and functional analyses of the archaeal tRNA m2G/m22G10 methyltransferase aTrm11 provide mechanistic insights into site specificity of a tRNA methyltransferase that contains common RNA-binding modules.
Nucleic Acids Res., 2016
6JPL
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BU of 6jpl by Molmil
The X-ray structure of yeast tRNA methyltransferase Trm7-Trm734 in complex with S-adenosyl-L-methionine
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, S-ADENOSYLMETHIONINE, SULFATE ION, ...
Authors:Hirata, A, Okada, K, Yoshii, K, Shiraisi, H, Saijo, S, Yonezawa, K, Shimizu, N, Hori, H.
Deposit date:2019-03-27
Release date:2019-10-02
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.32 Å)
Cite:Structure of tRNA methyltransferase complex of Trm7 and Trm734 reveals a novel binding interface for tRNA recognition.
Nucleic Acids Res., 47, 2019
4QJV
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BU of 4qjv by Molmil
The X-ray crystal structure of Rpo3/Rpo11 heterodimer of euryarchaeal RNA polymerase from Thermococcus kodakarensis
Descriptor: DNA-directed RNA polymerase subunit D, DNA-directed RNA polymerase subunit L, PHOSPHATE ION
Authors:Hirata, A, Murakami, K.S.
Deposit date:2014-06-05
Release date:2014-10-08
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.601 Å)
Cite:The X-ray crystal structure of the euryarchaeal RNA polymerase in an open-clamp configuration
Nat Commun, 5, 2014
1CQY
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BU of 1cqy by Molmil
STARCH BINDING DOMAIN OF BACILLUS CEREUS BETA-AMYLASE
Descriptor: BETA-AMYLASE
Authors:Yoon, H.J, Hirata, A, Adachi, M, Sekine, A, Utsumi, S, Mikami, B.
Deposit date:1999-08-12
Release date:1999-08-20
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Structure of Separated Starch-Binding Domain of Bacillus cereus B-amylase
To be Published
7EDC
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BU of 7edc by Molmil
Crystal structure of mutant tRNA [Gm18] methyltransferase TrmH (E107G) in complex with S-adenosyl-L-methionine from Escherichia coli
Descriptor: PHOSPHATE ION, S-ADENOSYLMETHIONINE, tRNA (guanosine(18)-2'-O)-methyltransferase
Authors:Kono, Y, Ito, A, Okamoto, A, Yamagami, R, Hirata, A, Hori, H.
Deposit date:2021-03-15
Release date:2022-03-23
Method:X-RAY DIFFRACTION (1.946 Å)
Cite:Unique substrate specificity of type II tRNA Gm18 methyltransferase from Escherichia coli
To Be Published
5AW0
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BU of 5aw0 by Molmil
Kinetics by X-ray crystallography: Tl+-substitution of bound K+ in the E2.MgF42-.2K+ crystal after 55 min
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CHOLESTEROL, ...
Authors:Ogawa, H, Cornelius, F, Hirata, A, Toyoshima, C.
Deposit date:2015-07-01
Release date:2015-09-02
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Sequential substitution of K(+) bound to Na(+),K(+)-ATPase visualized by X-ray crystallography.
Nat Commun, 6, 2015
3W5B
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BU of 3w5b by Molmil
Crystal structure of the recombinant SERCA1a (calcium pump of fast twitch skeletal muscle) in the E1.Mg2+ state
Descriptor: 2',3'-O-[(1r)-2,4,6-trinitrocyclohexa-2,5-diene-1,1-diyl]adenosine 5'-(dihydrogen phosphate), MAGNESIUM ION, PHOSPHATIDYLETHANOLAMINE, ...
Authors:Toyoshima, C, Iwasawa, S, Ogawa, H, Hirata, A, Tsueda, J, Inesi, G.
Deposit date:2013-01-27
Release date:2013-03-06
Last modified:2013-03-27
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Crystal structures of the calcium pump and sarcolipin in the Mg2+-bound E1 state.
Nature, 495, 2013
3W5C
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BU of 3w5c by Molmil
Crystal structure of the calcium pump in the E2 state free from exogenous inhibitors
Descriptor: PHOSPHATIDYLETHANOLAMINE, SERCA1a, SODIUM ION
Authors:Toyoshima, C, Iwasawa, S, Ogawa, H, Hirata, A, Tsueda, J, Inesi, G.
Deposit date:2013-01-27
Release date:2013-03-06
Last modified:2013-03-27
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structures of the calcium pump and sarcolipin in the Mg2+-bound E1 state.
Nature, 495, 2013
3W5A
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BU of 3w5a by Molmil
Crystal structure of the calcium pump and sarcolipin from rabbit fast twitch skeletal muscle in the E1.Mg2+ state
Descriptor: 2',3'-O-[(1r)-2,4,6-trinitrocyclohexa-2,5-diene-1,1-diyl]adenosine 5'-(dihydrogen phosphate), MAGNESIUM ION, PHOSPHATIDYLETHANOLAMINE, ...
Authors:Toyoshima, C, Iwasawa, S, Ogawa, H, Hirata, A, Tsueda, J, Inesi, G.
Deposit date:2013-01-27
Release date:2013-03-06
Last modified:2013-03-27
Method:X-RAY DIFFRACTION (3.01 Å)
Cite:Crystal structures of the calcium pump and sarcolipin in the Mg2+-bound E1 state.
Nature, 495, 2013
3W5D
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BU of 3w5d by Molmil
Crystal structure of the calcium pump in the E2+Pi state
Descriptor: PHOSPHATIDYLETHANOLAMINE, SERCA1a, SODIUM ION, ...
Authors:Toyoshima, C, Iwasawa, S, Ogawa, H, Hirata, A, Tsueda, J, Inesi, G.
Deposit date:2013-01-27
Release date:2013-03-06
Last modified:2013-03-27
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Crystal structures of the calcium pump and sarcolipin in the Mg2+-bound E1 state.
Nature, 495, 2013

 

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