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3ABD
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BU of 3abd by Molmil
Structure of human REV7 in complex with a human REV3 fragment in a monoclinic crystal
Descriptor: DNA polymerase zeta catalytic subunit, Mitotic spindle assembly checkpoint protein MAD2B
Authors:Hara, K, Hashimoto, H, Murakumo, Y, Kobayashi, S, Kogame, T, Unzai, S, Akashi, S, Takeda, S, Shimizu, T, Sato, M.
Deposit date:2009-12-07
Release date:2010-02-16
Last modified:2021-11-10
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of human REV7 in complex with a human REV3 fragment and structural implication of the interaction between DNA polymerase {zeta} and REV1
J.Biol.Chem., 285, 2010
3ABE
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BU of 3abe by Molmil
Structure of human REV7 in complex with a human REV3 fragment in a tetragonal crystal
Descriptor: DNA polymerase zeta catalytic subunit, Mitotic spindle assembly checkpoint protein MAD2B
Authors:Hara, K, Hashimoto, H, Murakumo, Y, Kobayashi, S, Kogame, T, Unzai, S, Akashi, S, Takeda, S, Shimizu, T, Sato, M.
Deposit date:2009-12-07
Release date:2010-02-16
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal structure of human REV7 in complex with a human REV3 fragment and structural implication of the interaction between DNA polymerase {zeta} and REV1
J.Biol.Chem., 285, 2010
2ZP9
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BU of 2zp9 by Molmil
The Nature of the TRAP:Anti-TRAP complex
Descriptor: TRYPTOPHAN, Transcription attenuation protein mtrB, Tryptophan RNA-binding attenuator protein-inhibitory protein, ...
Authors:Watanabe, M, Heddle, J.G, Unzai, S, Akashi, S, Park, S.Y, Tame, J.R.H.
Deposit date:2008-07-08
Release date:2009-02-03
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:The nature of the TRAP-Anti-TRAP complex.
Proc.Natl.Acad.Sci.USA, 106, 2009
2ZP8
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BU of 2zp8 by Molmil
The Nature of the TRAP:Anti-TRAP complex
Descriptor: TRYPTOPHAN, Transcription attenuation protein mtrB, Tryptophan RNA-binding attenuator protein-inhibitory protein, ...
Authors:Watanabe, M, Heddle, J.G, Unzai, S, Akashi, S, Park, S.Y, Tame, J.R.H.
Deposit date:2008-07-08
Release date:2009-02-03
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:The nature of the TRAP-Anti-TRAP complex.
Proc.Natl.Acad.Sci.USA, 106, 2009
3A8R
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BU of 3a8r by Molmil
The structure of the N-terminal regulatory domain of a plant NADPH oxidase
Descriptor: CALCIUM ION, Putative uncharacterized protein
Authors:Oda, T, Hashimoto, H, Kuwabara, N, Akashi, S, Hayashi, K, Kojima, C, Wong, H.L, Kawasaki, T, Shimamoto, K, Sato, M, Shimizu, T.
Deposit date:2009-10-07
Release date:2009-10-27
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:The structure of the N-terminal regulatory domain of a plant NADPH oxidase and its functional implications
J.Biol.Chem., 285, 2010
3APM
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BU of 3apm by Molmil
Crystal structure of the human SNP PAD4 protein
Descriptor: Protein-arginine deiminase type-4
Authors:Horikoshi, N, Tachiwana, H, Saito, K, Osakabe, A, Sato, M, Yamada, M, Akashi, S, Nishimura, Y, Kagawa, W, Kurumizaka, H.
Deposit date:2010-10-19
Release date:2011-01-26
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural and biochemical analyses of the human PAD4 variant encoded by a functional haplotype gene
Acta Crystallogr.,Sect.D, 67, 2011
3APN
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BU of 3apn by Molmil
Crystal structure of the human wild-type PAD4 protein
Descriptor: Protein-arginine deiminase type-4
Authors:Horikoshi, N, Tachiwana, H, Saito, K, Osakabe, A, Sato, M, Yamada, M, Akashi, S, Nishimura, Y, Kagawa, W, Kurumizaka, H.
Deposit date:2010-10-19
Release date:2011-01-26
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural and biochemical analyses of the human PAD4 variant encoded by a functional haplotype gene
Acta Crystallogr.,Sect.D, 67, 2011
4OKV
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BU of 4okv by Molmil
Crystal structure of anopheline anti-platelet protein with Fab antibody
Descriptor: Anti-platelet aggregation protein, heavy chain of 8H7 mAb, light chain of 8H7 mAb
Authors:Park, S.Y, Sugiyama, K.
Deposit date:2014-01-23
Release date:2014-04-30
Method:X-RAY DIFFRACTION (1.802 Å)
Cite:The crystal structure of anopheles anti-platelet protein, a powerful anti-coagulant, in complex with an antibody
To be Published
5F53
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BU of 5f53 by Molmil
Nano-ring of cadmium ions coordinated by nvPizza2-S16S58
Descriptor: CADMIUM ION, CHLORIDE ION, NVPIZZA2-S16S58
Authors:Voet, A.R.D, Tame, J.R.H.
Deposit date:2015-12-04
Release date:2016-12-14
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:A cadmium chloride ring created by a designed symmetrical protein
To Be Published
8I60
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BU of 8i60 by Molmil
Crystal structure of GAS41 YEATS domain in complex with histone H3K27cr
Descriptor: ALA-ARG-KCR-SER-ALA-PRO, GLYCEROL, SULFATE ION, ...
Authors:Konuma, T, Zhou, M.-M.
Deposit date:2023-01-26
Release date:2023-07-26
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Histone H3 lysine 27 crotonylation mediates gene transcriptional repression in chromatin.
Mol.Cell, 83, 2023
6ICF
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BU of 6icf by Molmil
The NZ-1 Fab complexed with the PDZ tandem fragment of A. aeolicus S2P homolog with the PA12 tag inserted between the residues 263 and 266
Descriptor: Heavy chain of antigen binding fragment, Fab of NZ-1, Light chain of antigen binding fragment, ...
Authors:Tamura, R, Oi, R, Kaneko, M.K, Kato, Y, Nogi, T.
Deposit date:2018-09-05
Release date:2019-02-13
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (4 Å)
Cite:Application of the NZ-1 Fab as a crystallization chaperone for PA tag-inserted target proteins.
Protein Sci., 28, 2019
6ICC
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BU of 6icc by Molmil
The NZ-1 Fab complexed with the PDZ tandem fragment of A. aeolicus S2P homolog with the PA12 tag inserted between the residues 181 and 186
Descriptor: Heavy chain of antigen binding fragment, Fab of NZ-1, Light chain of antigen binding fragment, ...
Authors:Tamura, R, Oi, R, Kaneko, M.K, Kato, Y, Nogi, T.
Deposit date:2018-09-05
Release date:2019-02-13
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2 Å)
Cite:Application of the NZ-1 Fab as a crystallization chaperone for PA tag-inserted target proteins.
Protein Sci., 28, 2019
2E47
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BU of 2e47 by Molmil
Crystal Structure Analysis of the clock protein EA4 (glycosylation form)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, COPPER (II) ION, Time interval measuring enzyme TIME, ...
Authors:Park, S.-Y, Hiraki, T.
Deposit date:2006-12-05
Release date:2007-12-11
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.11 Å)
Cite:the clock protein EA4 ticks away with movement of a mobile copper ion
To be Published
2E46
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BU of 2e46 by Molmil
Crystal Structure Analysis of the clock protein EA4
Descriptor: COPPER (II) ION, Time interval measuring enzyme TIME, ZINC ION
Authors:Park, S.-Y, Hiraki, T.
Deposit date:2006-12-05
Release date:2008-02-05
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:the clock protein EA4 ticks away with movement of a mobile copper ion
To be Published
5GZ9
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BU of 5gz9 by Molmil
Crystal structure of catalytic domain of Protein O-mannosyl Kinase in complexes with AMP-PNP, Magnesium ions and glycopeptide
Descriptor: MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, Protein O-mannose kinase, ...
Authors:Nagae, M, Yamaguchi, Y.
Deposit date:2016-09-27
Release date:2017-03-29
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:3D structural analysis of protein O-mannosyl kinase, POMK, a causative gene product of dystroglycanopathy.
Genes Cells, 22, 2017
5GSE
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BU of 5gse by Molmil
Crystal structure of unusual nucleosome
Descriptor: DNA (250-MER), Histone H2A type 1-B/E, Histone H2B type 1-J, ...
Authors:Kato, D, Osakabe, A, Arimura, Y, Park, S.Y, Kurumizaka, H.
Deposit date:2016-08-16
Release date:2017-05-03
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.14 Å)
Cite:Crystal structure of the overlapping dinucleosome composed of hexasome and octasome
Science, 356, 2017
5GZ8
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BU of 5gz8 by Molmil
Crystal structure of catalytic domain of Protein O-mannosyl Kinase in ligand-free form
Descriptor: Protein O-mannose kinase
Authors:Nagae, M, Yamaguchi, Y.
Deposit date:2016-09-27
Release date:2017-03-29
Last modified:2017-12-06
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:3D structural analysis of protein O-mannosyl kinase, POMK, a causative gene product of dystroglycanopathy.
Genes Cells, 22, 2017
3VSK
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BU of 3vsk by Molmil
Crystal structure of penicillin-binding protein 3 (PBP3) from methicilin-resistant Staphylococcus aureus in the apo form.
Descriptor: Penicillin-binding protein 3
Authors:Yoshida, H, Tame, J.R, Park, S.Y.
Deposit date:2012-04-25
Release date:2012-10-31
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.301 Å)
Cite:Crystal Structures of Penicillin-Binding Protein 3 (PBP3) from Methicillin-Resistant Staphylococcus aureus in the Apo and Cefotaxime-Bound Forms.
J.Mol.Biol., 423, 2012
3VSL
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BU of 3vsl by Molmil
Crystal structure of penicillin-binding protein 3 (PBP3) from methicilin-resistant Staphylococcus aureus in the cefotaxime bound form.
Descriptor: CEFOTAXIME, C3' cleaved, open, ...
Authors:Yoshida, H, Tame, J.R, Park, S.Y.
Deposit date:2012-04-25
Release date:2012-10-31
Last modified:2017-03-15
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal Structures of Penicillin-Binding Protein 3 (PBP3) from Methicillin-Resistant Staphylococcus aureus in the Apo and Cefotaxime-Bound Forms.
J.Mol.Biol., 423, 2012
5Z01
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BU of 5z01 by Molmil
Native Escherichia coli L,D-carboxypeptidase A (LdcA)
Descriptor: MAGNESIUM ION, Murein tetrapeptide carboxypeptidase
Authors:Meyer, K, Tame, J.R.H.
Deposit date:2017-12-18
Release date:2018-04-25
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:The crystal structure and oligomeric form of Escherichia colil,d-carboxypeptidase A.
Biochem. Biophys. Res. Commun., 499, 2018
5Z03
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BU of 5z03 by Molmil
Mutant (S106A) Escherichia coli L,D-carboxypeptidase A (LdcA)
Descriptor: Murein tetrapeptide carboxypeptidase
Authors:Meyer, K, Tame, J.R.H.
Deposit date:2017-12-18
Release date:2018-04-25
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.755 Å)
Cite:The crystal structure and oligomeric form of Escherichia colil,d-carboxypeptidase A.
Biochem. Biophys. Res. Commun., 499, 2018
6AL1
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BU of 6al1 by Molmil
The NZ-1 Fab complexed with the PDZ tandem fragment of A. aeolicus S2P homolog with the PA12 tag inserted between the residues 181 and 184
Descriptor: Heavy chain of antigen binding fragment, Fab of NZ-1, Light chain of antigen binding fragment, ...
Authors:Tamura, R, Oi, R, Kaneko, M.K, Kato, Y, Nogi, T.
Deposit date:2018-09-05
Release date:2019-02-13
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Application of the NZ-1 Fab as a crystallization chaperone for PA tag-inserted target proteins.
Protein Sci., 28, 2019
6AKQ
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BU of 6akq by Molmil
The PDZ tandem fragment of A. aeolicus S2P homolog with the PA12 tag inserted between the residues 263 and 267
Descriptor: PDZ tandem fragment of A. aeolicus site-2 protease homolog with the PA tag insertion
Authors:Tamura, R, Oi, R, Kaneko, M.K, Kato, Y, Nogi, T.
Deposit date:2018-09-03
Release date:2019-02-13
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Application of the NZ-1 Fab as a crystallization chaperone for PA tag-inserted target proteins.
Protein Sci., 28, 2019
6AL0
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BU of 6al0 by Molmil
The NZ-1 Fab complexed with the PDZ tandem fragment of A. aeolicus S2P homolog with the PA12 tag inserted between the residues 263 and 267
Descriptor: Heavy chain of antigen binding fragment, Fab of NZ-1, Light chain of antigen binding fragment, ...
Authors:Tamura, R, Oi, R, Kaneko, M.K, Kato, Y, Nogi, T.
Deposit date:2018-09-05
Release date:2019-02-13
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Application of the NZ-1 Fab as a crystallization chaperone for PA tag-inserted target proteins.
Protein Sci., 28, 2019
7W71
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BU of 7w71 by Molmil
Crystal structure of the PDZ-C domain of E. coli RseP in complex with 12C7 Fab
Descriptor: Heavy chain of Fab, Light chain of Fab, Regulator of sigma-E protease RseP
Authors:Hirose, T, Katagiri, S, Nogi, T.
Deposit date:2021-12-02
Release date:2022-09-07
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Mechanistic insights into intramembrane proteolysis by E. coli site-2 protease homolog RseP.
Sci Adv, 8, 2022

 

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