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7RDE
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BU of 7rde by Molmil
Human Triose Phosphate Isomerase Q181P
Descriptor: BROMIDE ION, CALCIUM ION, Triosephosphate isomerase
Authors:VanDemark, A.P, Kowalski, J.
Deposit date:2021-07-09
Release date:2022-05-04
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.31 Å)
Cite:Itavastatin and resveratrol increase triosephosphate isomerase protein in a newly identified variant of TPI deficiency.
Dis Model Mech, 15, 2022
1JAT
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BU of 1jat by Molmil
Mms2/Ubc13 Ubiquitin Conjugating Enzyme Complex
Descriptor: Ubiquitin-Conjugating Enzyme E2-17.5 KDA, Ubiquitin-Conjugating Enzyme Variant Mms2
Authors:VanDemark, A.P, Hofmann, R.M, Tsui, C, Pickart, C.M, Wolberger, C.
Deposit date:2001-05-31
Release date:2001-06-20
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Molecular insights into polyubiquitin chain assembly: crystal structure of the Mms2/Ubc13 heterodimer.
Cell(Cambridge,Mass.), 105, 2001
1JBB
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BU of 1jbb by Molmil
Ubiquitin Conjugating Enzyme, Ubc13
Descriptor: ubiquitin conjugating enzyme E2-17.5 KDA
Authors:VanDemark, A.P, Hofmann, R.M, Tsui, C, Pickart, C.M, Wolberger, C.
Deposit date:2001-06-03
Release date:2001-06-20
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (2 Å)
Cite:Molecular insights into polyubiquitin chain assembly: crystal structure of the Mms2/Ubc13 heterodimer.
Cell(Cambridge,Mass.), 105, 2001
3BIP
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BU of 3bip by Molmil
Crystal structure of yeast Spt16 N-terminal Domain
Descriptor: FACT complex subunit SPT16
Authors:VanDemark, A.P, Xin, H, McCullough, L, Rawlins, R, Bentley, S, Heroux, A, David, S.J, Hill, C.P, Formosa, T.
Deposit date:2007-11-30
Release date:2007-12-18
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:Structural and functional analysis of the Spt16p N-terminal domain reveals overlapping roles of yFACT subunits.
J.Biol.Chem., 283, 2008
3BIT
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BU of 3bit by Molmil
Crystal structure of yeast Spt16 N-terminal Domain
Descriptor: BETA-MERCAPTOETHANOL, CHLORIDE ION, FACT complex subunit SPT16, ...
Authors:VanDemark, A.P, Xin, H, McCullough, L, Rawlins, R, Bentley, S, Heroux, A, David, S.J, Hill, C.P, Formosa, T.
Deposit date:2007-11-30
Release date:2007-12-18
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural and functional analysis of the Spt16p N-terminal domain reveals overlapping roles of yFACT subunits.
J.Biol.Chem., 283, 2008
3BIQ
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BU of 3biq by Molmil
Crystal structure of yeast Spt16 N-terminal Domain
Descriptor: FACT complex subunit SPT16, GLYCEROL
Authors:VanDemark, A.P, Xin, H, McCullough, L, Rawlins, R, Bentley, S, Heroux, A, David, S.J, Hill, C.P, Formosa, T.
Deposit date:2007-11-30
Release date:2007-12-18
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.73 Å)
Cite:Structural and functional analysis of the Spt16p N-terminal domain reveals overlapping roles of yFACT subunits.
J.Biol.Chem., 283, 2008
2GCJ
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BU of 2gcj by Molmil
Crystal Structure of the Pob3 middle domain
Descriptor: Hypothetical 63.0 kDa protein in DAK1-ORC1 intergenic region
Authors:VanDemark, A.P.
Deposit date:2006-03-14
Release date:2006-05-23
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:The Structure of the yFACT Pob3-M Domain, Its Interaction with the DNA Replication Factor RPA, and a Potential Role in Nucleosome Deposition.
Mol.Cell, 22, 2006
2GCL
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BU of 2gcl by Molmil
Structure of the Pob3 Middle domain
Descriptor: CHLORIDE ION, Hypothetical 63.0 kDa protein in DAK1-ORC1 intergenic region
Authors:VanDemark, A.P.
Deposit date:2006-03-14
Release date:2006-05-23
Last modified:2021-10-20
Method:X-RAY DIFFRACTION (2.21 Å)
Cite:The Structure of the yFACT Pob3-M Domain, Its Interaction with the DNA Replication Factor RPA, and a Potential Role in Nucleosome Deposition.
Mol.Cell, 22, 2006
2R0Y
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BU of 2r0y by Molmil
Structure of the Rsc4 tandem bromodomain in complex with an acetylated H3 peptide
Descriptor: Chromatin structure-remodeling complex protein RSC4, Histone H3 peptide
Authors:VanDemark, A.P, Kasten, M.M, Ferris, E, Heroux, A, Hill, C.P, Cairns, B.R.
Deposit date:2007-08-21
Release date:2007-10-30
Last modified:2017-10-25
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Autoregulation of the rsc4 tandem bromodomain by gcn5 acetylation.
Mol.Cell, 27, 2007
2R0V
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BU of 2r0v by Molmil
Structure of the Rsc4 tandem bromodomain acetylated at K25
Descriptor: Chromatin structure-remodeling complex protein RSC4, SULFATE ION
Authors:VanDemark, A.P, Kasten, M.M, Ferris, E, Heroux, A, Hill, C.P, Cairns, B.R.
Deposit date:2007-08-21
Release date:2007-10-30
Last modified:2017-10-25
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Autoregulation of the rsc4 tandem bromodomain by gcn5 acetylation.
Mol.Cell, 27, 2007
2R10
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BU of 2r10 by Molmil
Structure of an acetylated Rsc4 tandem bromodomain Histone Chimera
Descriptor: 1,2-ETHANEDIOL, Chromatin structure-remodeling complex protein RSC4, LINKER, ...
Authors:VanDemark, A.P, Kasten, M.M, Ferris, E, Heroux, A, Hill, C.P, Cairns, B.R.
Deposit date:2007-08-21
Release date:2007-10-30
Last modified:2017-10-25
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Autoregulation of the rsc4 tandem bromodomain by gcn5 acetylation.
Mol.Cell, 27, 2007
2R0S
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BU of 2r0s by Molmil
Crystal Structure of the Rsc4 tandem bromodomain
Descriptor: Chromatin structure-remodeling complex protein RSC4
Authors:VanDemark, A.P, Kasten, M.M, Ferris, E, Heroux, A, Hill, C.P, Cairns, B.R.
Deposit date:2007-08-21
Release date:2007-10-30
Last modified:2017-10-25
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Autoregulation of the rsc4 tandem bromodomain by gcn5 acetylation.
Mol.Cell, 27, 2007
5VFZ
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BU of 5vfz by Molmil
Integrase from mycobacterium phage Brujita
Descriptor: ACETATE ION, GLYCEROL, Gp33, ...
Authors:VanDemark, A.P, Lunt, B, Hatfull, G.F.
Deposit date:2017-04-10
Release date:2018-04-18
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.847 Å)
Cite:Integrase from mycobacterium phage Brujita
To Be Published
2R3C
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BU of 2r3c by Molmil
Structure of the gp41 N-peptide in complex with the HIV entry inhibitor PIE1
Descriptor: CHLORIDE ION, HIV entry inhibitor PIE1, YTTRIUM (III) ION, ...
Authors:VanDemark, A.P, Welch, B, Heroux, A, Hill, C.P, Kay, M.S.
Deposit date:2007-08-29
Release date:2007-10-02
Last modified:2018-08-08
Method:X-RAY DIFFRACTION (1.73 Å)
Cite:Potent D-peptide inhibitors of HIV-1 entry
Proc.Natl.Acad.Sci.Usa, 104, 2007
2R5D
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BU of 2r5d by Molmil
Structure of the gp41 N-trimer in complex with the HIV entry inhibitor PIE7
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, GLYCEROL, HIV entry inhibitor PIE7, ...
Authors:VanDemark, A.P, Welch, B, Heroux, A, Hill, C.P, Kay, M.S.
Deposit date:2007-09-03
Release date:2007-10-02
Last modified:2017-10-25
Method:X-RAY DIFFRACTION (1.66 Å)
Cite:Potent D-peptide inhibitors of HIV-1 entry
Proc.Natl.Acad.Sci.Usa, 104, 2007
2R5B
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BU of 2r5b by Molmil
Structure of the gp41 N-trimer in complex with the HIV entry inhibitor PIE7
Descriptor: HIV entry inhibitor PIE7, SULFATE ION, gp41 N-peptide
Authors:VanDemark, A.P, Welch, B, Heroux, A, Hill, C.P, Kay, M.S.
Deposit date:2007-09-03
Release date:2007-10-02
Last modified:2017-10-25
Method:X-RAY DIFFRACTION (2 Å)
Cite:Potent D-peptide inhibitors of HIV-1 entry
Proc.Natl.Acad.Sci.Usa, 104, 2007
8EXZ
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BU of 8exz by Molmil
Structure of GDAP1 containing CMT mutant T157P
Descriptor: Ganglioside-induced differentiation-associated protein 1
Authors:Googins, M.R, VanDemark, A.P.
Deposit date:2022-10-26
Release date:2023-11-08
Method:X-RAY DIFFRACTION (2.82 Å)
Cite:Structure of GDAP1 containing CMT mutant T157P
To Be Published
6UIH
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BU of 6uih by Molmil
Crystal structure of the core domain from the GST-like protein GDAP1
Descriptor: Ganglioside-induced differentiation-associated protein 1
Authors:Googins, M.R, VanDemark, A.P.
Deposit date:2019-09-30
Release date:2020-04-29
Last modified:2020-05-13
Method:X-RAY DIFFRACTION (2.826 Å)
Cite:Structural and functional divergence of GDAP1 from the glutathione S-transferase superfamily.
Faseb J., 34, 2020
4ZVJ
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BU of 4zvj by Molmil
Structure of human triose phosphate isomerase K13M
Descriptor: POTASSIUM ION, SODIUM ION, Triosephosphate isomerase
Authors:Amrich, C.G, Smith, C, Heroux, A, VanDemark, A.P.
Deposit date:2015-05-18
Release date:2016-03-09
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.6996 Å)
Cite:Triosephosphate isomerase I170V alters catalytic site, enhances stability and induces pathology in a Drosophila model of TPI deficiency.
Biochim. Biophys. Acta, 1852, 2015
4J2N
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BU of 4j2n by Molmil
Crystal Structure of mycobacteriophage Pukovnik Xis
Descriptor: Gp37, SULFATE ION
Authors:Homa, N.J, Amrich, C.G, Heroux, A, VanDemark, A.P.
Deposit date:2013-02-04
Release date:2013-10-23
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.348 Å)
Cite:The Structure of Xis Reveals the Basis for Filament Formation and Insight into DNA Bending within a Mycobacteriophage Intasome.
J.Mol.Biol., 426, 2014
6NLH
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BU of 6nlh by Molmil
Structure of human triose phosphate isomerase R189A
Descriptor: BROMIDE ION, PHOSPHATE ION, SODIUM ION, ...
Authors:Richards, K.R, Roland, B.P, Palladino, M.J, VanDemark, A.P.
Deposit date:2019-01-08
Release date:2019-06-19
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.199 Å)
Cite:Missense variant in TPI1 (Arg189Gln) causes neurologic deficits through structural changes in the triosephosphate isomerase catalytic site and reduced enzyme levels in vivo.
Biochim Biophys Acta Mol Basis Dis, 1865, 2019
1ZY7
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BU of 1zy7 by Molmil
Crystal structure of the catalytic domain of an adenosine deaminase that acts on RNA (hADAR2) bound to inositol hexakisphosphate (IHP)
Descriptor: INOSITOL HEXAKISPHOSPHATE, RNA-specific adenosine deaminase B1, isoform DRADA2a, ...
Authors:Macbeth, M.R, Schubert, H.L, Vandemark, A.P, Lingam, A.T, Hill, C.P, Bass, B.L.
Deposit date:2005-06-09
Release date:2005-09-13
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Inositol hexakisphosphate is bound in the ADAR2 core and required for RNA editing.
Science, 309, 2005
3THF
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BU of 3thf by Molmil
Crystal structure of the SD2 domain from Drosophila Shroom
Descriptor: Protein Shroom
Authors:Mohan, S, VanDemark, A.P.
Deposit date:2011-08-18
Release date:2012-06-06
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.6951 Å)
Cite:Structure of Shroom domain 2 reveals a three-segmented coiled-coil required for dimerization, Rock binding, and apical constriction.
Mol Biol Cell, 23, 2012
3V46
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BU of 3v46 by Molmil
Crystal Structure of Yeast Cdc73 C-Terminal Domain
Descriptor: Cell division control protein 73
Authors:Amrich, C.G, VanDemark, A.P.
Deposit date:2011-12-14
Release date:2012-02-15
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.549 Å)
Cite:Cdc73 subunit of Paf1 complex contains C-terminal Ras-like domain that promotes association of Paf1 complex with chromatin.
J.Biol.Chem., 287, 2012
5E8B
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BU of 5e8b by Molmil
Crystal structure of the S. cerevisiae Rtf1 histone modification domain mutant R126A
Descriptor: BENZAMIDINE, RNA polymerase-associated protein RTF1, SODIUM ION
Authors:Wier, A.D, Heroux, A, VanDemark, A.P.
Deposit date:2015-10-14
Release date:2016-11-09
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.62 Å)
Cite:The Histone Modification Domain of Paf1 Complex Subunit Rtf1 Directly Stimulates H2B Ubiquitylation through an Interaction with Rad6.
Mol. Cell, 64, 2016

 

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