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1PER
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BU of 1per by Molmil
THE COMPLEX BETWEEN PHAGE 434 REPRESSION DNA-BINDING DOMAIN AND OPERATOR SITE OR3: STRUCTURAL DIFFERENCES BETWEEN CONSENSUS AND NON-CONSENSUS HALF-SITES
Descriptor: DNA (5'-D(*AP*AP*GP*TP*AP*CP*AP*GP*TP*TP*TP*TP*TP*CP*TP*TP*G P*TP*AP*T)-3'), DNA (5'-D(*TP*AP*TP*AP*CP*AP*AP*GP*AP*AP*AP*AP*AP*CP*TP*GP*T P*AP*CP*T)-3'), PROTEIN (434 REPRESSOR)
Authors:Rodgers, D.W, Harrison, S.C.
Deposit date:1993-11-09
Release date:1994-01-31
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:The complex between phage 434 repressor DNA-binding domain and operator site OR3: structural differences between consensus and non-consensus half-sites.
Structure, 1, 1993
1HMV
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BU of 1hmv by Molmil
THE STRUCTURE OF UNLIGANDED REVERSE TRANSCRIPTASE FROM THE HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
Descriptor: HIV-1 REVERSE TRANSCRIPTASE (SUBUNIT P51), HIV-1 REVERSE TRANSCRIPTASE (SUBUNIT P66), MAGNESIUM ION
Authors:Rodgers, D.W, Gamblin, S.J, Harris, B.A, Ray, S, Culp, J.S, Hellmig, B, Woolf, D.J, Debouck, C, Harrison, S.C.
Deposit date:1994-12-15
Release date:1995-03-31
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:The structure of unliganded reverse transcriptase from the human immunodeficiency virus type 1.
Proc.Natl.Acad.Sci.USA, 92, 1995
8SW1
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BU of 8sw1 by Molmil
Puromycin-sensitive aminopeptidase with bound peptide
Descriptor: Polyglutamine peptide, Puromycin-sensitive aminopeptidase, ZINC ION
Authors:Rodgers, D.W, Madabushi, S.
Deposit date:2023-05-17
Release date:2023-07-26
Method:X-RAY DIFFRACTION (3.65 Å)
Cite:Structure of puromycin-sensitive aminopeptidase and polyglutamine binding.
Plos One, 18, 2023
8SW0
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BU of 8sw0 by Molmil
Puromycin sensitive aminopeptidase
Descriptor: 1,4-DIETHYLENE DIOXIDE, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Puromycin-sensitive aminopeptidase, ...
Authors:Rodgers, D.W, Sampath, S.
Deposit date:2023-05-17
Release date:2023-07-26
Method:X-RAY DIFFRACTION (2.301 Å)
Cite:Structure of puromycin-sensitive aminopeptidase and polyglutamine binding.
Plos One, 18, 2023
3TUV
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BU of 3tuv by Molmil
Crystal structure of insulysin with bound ATP
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Insulin-degrading enzyme, Peptide
Authors:Rodgers, D.W, Noinaj, N.
Deposit date:2011-09-19
Release date:2011-10-26
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.27 Å)
Cite:Anion Activation Site of Insulin-degrading Enzyme.
J.Biol.Chem., 287, 2012
4P08
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BU of 4p08 by Molmil
Engineered thermostable dimeric cocaine esterase
Descriptor: Cocaine esterase
Authors:Rodgers, D.W, Chow, K.-M, Fang, L, Zhan, C.-G.
Deposit date:2014-02-20
Release date:2014-07-16
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.341 Å)
Cite:Rational design, preparation, and characterization of a therapeutic enzyme mutant with improved stability and function for cocaine detoxification.
Acs Chem.Biol., 9, 2014
2O36
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BU of 2o36 by Molmil
Crystal structure of engineered thimet oligopeptidase with neurolysin specificity in neurotensin cleavage site
Descriptor: Thimet oligopeptidase, ZINC ION
Authors:Rodgers, D.W, Lim, E.J.
Deposit date:2006-11-30
Release date:2007-01-23
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Swapping the substrate specificities of the neuropeptidases neurolysin and thimet oligopeptidase.
J.Biol.Chem., 282, 2007
2O3E
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BU of 2o3e by Molmil
Crystal structure of engineered neurolysin with thimet oligopeptidase specificity for neurotensin cleavage site.
Descriptor: Neurolysin, ZINC ION
Authors:Rodgers, D.W, Lim, E.J.
Deposit date:2006-12-01
Release date:2007-01-23
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Swapping the substrate specificities of the neuropeptidases neurolysin and thimet oligopeptidase.
J.Biol.Chem., 282, 2007
4FXY
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BU of 4fxy by Molmil
Crystal structure of rat neurolysin with bound pyrazolidin inhibitor
Descriptor: 1-{(2S)-1-[(3R)-3-(2-chlorophenyl)-2-(2-fluorophenyl)pyrazolidin-1-yl]-1-oxopropan-2-yl}-3-[(1R,3S,5R,7R)-tricyclo[3.3.1.1~3,7~]dec-2-yl]urea, Neurolysin, mitochondrial, ...
Authors:Rodgers, D.W, Hines, C.S.
Deposit date:2012-07-03
Release date:2013-11-13
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Allosteric inhibition of the neuropeptidase neurolysin.
J.Biol.Chem., 289, 2014
3CPM
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BU of 3cpm by Molmil
plant peptide deformylase PDF1B crystal structure
Descriptor: Peptide deformylase, chloroplast, SULFATE ION, ...
Authors:Rodgers, D.W, Houtz, R.L, Dirk, L.M.A, Schmidt, J.J, Cai, Y.
Deposit date:2008-03-31
Release date:2008-07-22
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Insights into the substrate specificity of plant peptide deformylase, an essential enzyme with potential for the development of novel biotechnology applications in agriculture
Biochem.J., 413, 2008
3P7L
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BU of 3p7l by Molmil
Rat Insulin Degrading Enzyme (Insulysin)
Descriptor: Insulin-degrading enzyme, ZINC ION
Authors:Rodgers, D.W, Noinaj, N.
Deposit date:2010-10-12
Release date:2011-07-20
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.0776 Å)
Cite:Identification of the allosteric regulatory site of insulysin.
Plos One, 6, 2011
3P7O
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BU of 3p7o by Molmil
Rat Insulin Degrading Enzyme (Insulysin) E111F mutant with two bound peptides
Descriptor: Insulin-degrading enzyme, active site bound peptide, distal site bound peptide
Authors:Rodgers, D.W, Noinaj, N.
Deposit date:2010-10-12
Release date:2011-07-27
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.1423 Å)
Cite:Identification of the allosteric regulatory site of insulysin.
Plos One, 6, 2011
5J8D
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BU of 5j8d by Molmil
Structure of nitroreductase from E. cloacae complexed with nicotinic acid adenine dinucleotide
Descriptor: FLAVIN MONONUCLEOTIDE, NICOTINIC ACID ADENINE DINUCLEOTIDE, Oxygen-insensitive NAD(P)H nitroreductase
Authors:Haynes, C.A, Koder, R.L, Miller, A.F, Rodgers, D.W.
Deposit date:2016-04-07
Release date:2017-05-17
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Mechanism-Informed Refinement Reveals Altered Substrate-Binding Mode for Catalytically Competent Nitroreductase.
Structure, 25, 2017
5J8G
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BU of 5j8g by Molmil
Structure of nitroreductase from E. cloacae complexed with para-nitrobenzoic acid
Descriptor: 4-NITROBENZOIC ACID, FLAVIN MONONUCLEOTIDE, Oxygen-insensitive NAD(P)H nitroreductase
Authors:Haynes, C.A, Koder, R.L, Miller, A.-F, Rodgers, D.W.
Deposit date:2016-04-07
Release date:2017-05-17
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Mechanism-Informed Refinement Reveals Altered Substrate-Binding Mode for Catalytically Competent Nitroreductase.
Structure, 25, 2017
1S4B
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BU of 1s4b by Molmil
Crystal structure of human thimet oligopeptidase.
Descriptor: Thimet oligopeptidase, ZINC ION
Authors:Ray, K, Hines, C.S, Coll-Rodriguez, J, Rodgers, D.W.
Deposit date:2004-01-15
Release date:2004-07-20
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of human thimet oligopeptidase provides insight into substrate recognition, regulation, and localization
J.Biol.Chem., 279, 2004
1ZA5
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BU of 1za5 by Molmil
Q69H-FeSOD
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, FE (III) ION, Superoxide dismutase [Fe]
Authors:Yikilmaz, E, Rodgers, D.W, Miller, A.F.
Deposit date:2005-04-05
Release date:2006-03-14
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The Crucial Importance of Chemistry in the Structure-Function Link: Manipulating Hydrogen Bonding in Iron-Containing Superoxide Dismutase.
Biochemistry, 45, 2006
2BKB
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BU of 2bkb by Molmil
q69e-FeSOD
Descriptor: FE (II) ION, SUPEROXIDE DISMUTASE [FE]
Authors:Yikilmaz, E, Rodgers, D.W, Miller, A.-F.
Deposit date:2005-02-14
Release date:2007-01-03
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:The Crucial Importance of Chemistry in the Structure-Function Link: Manipulating Hydrogen Bonding in Iron-Containing Superoxide Dismutase.
Biochemistry, 45, 2006
1Q6X
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BU of 1q6x by Molmil
Crystal structure of rat choline acetyltransferase
Descriptor: SODIUM ION, choline O-acetyltransferase
Authors:Cai, Y, Rodgers, D.W.
Deposit date:2003-08-14
Release date:2004-06-01
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Choline acetyltransferase structure reveals distribution of mutations that cause motor disorders.
Embo J., 23, 2004
1I1I
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BU of 1i1i by Molmil
NEUROLYSIN (ENDOPEPTIDASE 24.16) CRYSTAL STRUCTURE
Descriptor: NEUROLYSIN, ZINC ION
Authors:Brown, C.K, Madauss, K, Lian, W, Tolbert, W.D, Beck, M.R, Rodgers, D.W.
Deposit date:2001-02-01
Release date:2001-02-28
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure of neurolysin reveals a deep channel that limits substrate access.
Proc.Natl.Acad.Sci.USA, 98, 2001
2OR1
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BU of 2or1 by Molmil
RECOGNITION OF A DNA OPERATOR BY THE REPRESSOR OF PHAGE 434. A VIEW AT HIGH RESOLUTION
Descriptor: 434 REPRESSOR, DNA (5'-D(*AP*AP*GP*TP*AP*CP*AP*AP*AP*CP*TP*TP*TP*CP*TP*TP*G P*TP*AP*T)-3'), DNA (5'-D(*TP*AP*TP*AP*CP*AP*AP*GP*AP*AP*AP*GP*TP*TP*TP*GP*T P*AP*CP*T)-3')
Authors:Aggarwal, A.K, Rodgers, D.W, Drottar, M, Ptashne, M, Harrison, S.C.
Deposit date:1989-09-05
Release date:1989-09-05
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Recognition of a DNA operator by the repressor of phage 434: a view at high resolution.
Science, 242, 1988
1KQC
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BU of 1kqc by Molmil
Structure of Nitroreductase from E. cloacae Complex with Inhibitor Acetate
Descriptor: ACETATE ION, FLAVIN MONONUCLEOTIDE, OXYGEN-INSENSITIVE NAD(P)H NITROREDUCTASE
Authors:Haynes, C.A, Koder, R.L, Miller, A.F, Rodgers, D.W.
Deposit date:2002-01-04
Release date:2002-02-13
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structures of nitroreductase in three states: effects of inhibitor binding and reduction.
J.Biol.Chem., 277, 2002
1KQD
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BU of 1kqd by Molmil
Structure of Nitroreductase from E. cloacae Bound with 2e-Reduced Flavin Mononucleotide (FMN)
Descriptor: FLAVIN MONONUCLEOTIDE, OXYGEN-INSENSITIVE NAD(P)H NITROREDUCTASE
Authors:Haynes, C.A, Koder, R.L, Miller, A.F, Rodgers, D.W.
Deposit date:2002-01-04
Release date:2002-02-13
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structures of nitroreductase in three states: effects of inhibitor binding and reduction.
J.Biol.Chem., 277, 2002
1KQB
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BU of 1kqb by Molmil
Structure of Nitroreductase from E. cloacae complex with inhibitor benzoate
Descriptor: BENZOIC ACID, FLAVIN MONONUCLEOTIDE, OXYGEN-INSENSITIVE NAD(P)H NITROREDUCTASE
Authors:Haynes, C.A, Koder, R.L, Miller, A.F, Rodgers, D.W.
Deposit date:2002-01-04
Release date:2002-02-13
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structures of nitroreductase in three states: effects of inhibitor binding and reduction.
J.Biol.Chem., 277, 2002
3CUE
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BU of 3cue by Molmil
Crystal structure of a TRAPP subassembly activating the Rab Ypt1p
Descriptor: GTP-binding protein YPT1, PALMITIC ACID, Transport protein particle 18 kDa subunit, ...
Authors:Cai, Y, Reinisch, K.M.
Deposit date:2008-04-16
Release date:2008-07-08
Last modified:2012-03-21
Method:X-RAY DIFFRACTION (3.7 Å)
Cite:The structural basis for activation of the Rab Ypt1p by the TRAPP membrane-tethering complexes.
Cell(Cambridge,Mass.), 133, 2008
3CRO
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BU of 3cro by Molmil
THE PHAGE 434 CRO/OR1 COMPLEX AT 2.5 ANGSTROMS RESOLUTION
Descriptor: DNA (5'-D(*AP*AP*GP*TP*AP*CP*AP*AP*AP*CP*TP*TP*TP*CP*TP*TP*G P*TP*AP*T)-3'), DNA (5'-D(*TP*AP*TP*AP*CP*AP*AP*GP*AP*AP*AP*GP*TP*TP*TP*GP*T P*AP*CP*T)-3'), PROTEIN (434 CRO)
Authors:Mondragon, A, Harrison, S.C.
Deposit date:1990-07-06
Release date:1991-10-15
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:The phage 434 Cro/OR1 complex at 2.5 A resolution.
J.Mol.Biol., 219, 1991

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