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1F2R
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BU of 1f2r by Molmil
NMR STRUCTURE OF THE HETERODIMERIC COMPLEX BETWEEN CAD DOMAINS OF CAD AND ICAD
Descriptor: CASPASE-ACTIVATED DNASE, INHIBITOR OF CASPASE-ACTIVATED DNASE
Authors:Otomo, T, Sakahira, H, Uegaki, K, Nagata, S, Yamazaki, T.
Deposit date:2000-05-29
Release date:2000-06-08
Last modified:2022-02-16
Method:SOLUTION NMR
Cite:Structure of the heterodimeric complex between CAD domains of CAD and ICAD.
Nat.Struct.Biol., 7, 2000
1Y64
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BU of 1y64 by Molmil
Bni1p Formin Homology 2 Domain complexed with ATP-actin
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Actin, alpha skeletal muscle, ...
Authors:Otomo, T, Tomchick, D.R, Otomo, C, Panchal, S.C, Machius, M, Rosen, M.K.
Deposit date:2004-12-03
Release date:2005-01-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.05 Å)
Cite:Structural basis of actin filament nucleation and processive capping by a formin homology 2 domain
Nature, 433, 2005
2BNX
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BU of 2bnx by Molmil
Crystal structure of the dimeric regulatory domain of mouse diaphaneous-related formin (DRF), mDia1
Descriptor: CHLORIDE ION, DIAPHANOUS PROTEIN HOMOLOG 1
Authors:Otomo, T, Otomo, C, Tomchick, D.R, Machius, M, Rosen, M.K.
Deposit date:2005-04-05
Release date:2005-06-13
Last modified:2019-05-08
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural Basis of Rho Gtpase-Mediated Activation of the Formin Mdia1
Mol.Cell, 18, 2005
3OBV
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BU of 3obv by Molmil
Autoinhibited Formin mDia1 Structure
Descriptor: Protein diaphanous homolog 1, beta-D-fructofuranose-(2-1)-alpha-D-glucopyranose
Authors:Tomchick, D.R, Rosen, M.K, Otomo, T.
Deposit date:2010-08-09
Release date:2010-11-24
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Crystal structure of the Formin mDia1 in autoinhibited conformation.
Plos One, 5, 2010
4NAW
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BU of 4naw by Molmil
Crystal Structure of Human ATG12~ATG5-ATG16N in complex with a fragment of ATG3
Descriptor: Autophagy protein 5, Autophagy-related protein 16-1, SODIUM ION, ...
Authors:Metlagel, Z, Otomo, C, Takaesu, G, Otomo, T.
Deposit date:2013-10-22
Release date:2013-11-06
Last modified:2017-11-15
Method:X-RAY DIFFRACTION (2.195 Å)
Cite:Structural basis of ATG3 recognition by the autophagic ubiquitin-like protein ATG12.
Proc.Natl.Acad.Sci.USA, 110, 2013
4GDL
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BU of 4gdl by Molmil
Crystal Structure of Human Atg12~Atg5 Conjugate in Complex with an N-terminal Fragment of Atg16L1
Descriptor: Autophagy protein 5, Autophagy-related protein 16-1, SODIUM ION, ...
Authors:Otomo, C, Metlagel, Z, Takaesu, G, Otomo, T.
Deposit date:2012-07-31
Release date:2012-12-05
Last modified:2017-11-15
Method:X-RAY DIFFRACTION (2.875 Å)
Cite:Structure of the human ATG12~ATG5 conjugate required for LC3 lipidation in autophagy.
Nat.Struct.Mol.Biol., 20, 2013
4GDK
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BU of 4gdk by Molmil
Crystal Structure of Human Atg12~Atg5 Conjugate in Complex with an N-terminal Fragment of Atg16L1
Descriptor: Autophagy protein 5, Autophagy-related protein 16-1, SODIUM ION, ...
Authors:Otomo, C, Metlagel, Z, Takaesu, G, Otomo, T.
Deposit date:2012-07-31
Release date:2012-12-05
Last modified:2017-11-15
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structure of the human ATG12~ATG5 conjugate required for LC3 lipidation in autophagy.
Nat.Struct.Mol.Biol., 20, 2013
7T5P
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BU of 7t5p by Molmil
Cryo-EM structure of human SIMC1-SLF2 complex
Descriptor: SMC5-SMC6 complex localization factor protein 2, SUMO-interacting motif-containing protein 1
Authors:Maeda, S, Oravcova, M, Boddy, M.N, Otomo, T.
Deposit date:2021-12-13
Release date:2022-12-07
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:The Nse5/6-like SIMC1-SLF2 complex localizes SMC5/6 to viral replication centers.
Elife, 11, 2022
7JLQ
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BU of 7jlq by Molmil
cryo-EM structure of human ATG9A in LMNG micelles
Descriptor: Autophagy-related protein 9A
Authors:Maeda, S, Otomo, T.
Deposit date:2020-07-30
Release date:2020-10-28
Last modified:2020-12-16
Method:ELECTRON MICROSCOPY (4 Å)
Cite:Structure, lipid scrambling activity and role in autophagosome formation of ATG9A.
Nat.Struct.Mol.Biol., 27, 2020
7JLO
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BU of 7jlo by Molmil
Cryo-EM structure of human ATG9A in amphipols
Descriptor: Autophagy-related protein 9A
Authors:Maeda, S, Otomo, T.
Deposit date:2020-07-30
Release date:2020-10-28
Last modified:2020-12-16
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Structure, lipid scrambling activity and role in autophagosome formation of ATG9A.
Nat.Struct.Mol.Biol., 27, 2020
7JLP
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BU of 7jlp by Molmil
cryo-EM structure of human ATG9A in nanodiscs
Descriptor: (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate, Autophagy-related protein 9A
Authors:Maeda, S, Otomo, T.
Deposit date:2020-07-30
Release date:2020-10-28
Last modified:2020-12-16
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Structure, lipid scrambling activity and role in autophagosome formation of ATG9A.
Nat.Struct.Mol.Biol., 27, 2020
1C9F
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BU of 1c9f by Molmil
NMR STRUCTURE OF THE CAD DOMAIN OF CASPASE-ACTIVATED DNASE
Descriptor: CASPASE-ACTIVATED DNASE
Authors:Yamazaki, T, Uegaki, K.
Deposit date:1999-08-02
Release date:2000-02-16
Last modified:2022-02-16
Method:SOLUTION NMR
Cite:Structure of the CAD domain of caspase-activated DNase and interaction with the CAD domain of its inhibitor.
J.Mol.Biol., 297, 2000
7ELG
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BU of 7elg by Molmil
LC3B modificated with a covalent probe
Descriptor: 2-methylidene-5-thiophen-2-yl-cyclohexane-1,3-dione, Microtubule-associated proteins 1A/1B light chain 3B, SULFATE ION
Authors:Fan, S, Wan, W.
Deposit date:2021-04-10
Release date:2021-10-13
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.599 Å)
Cite:Inhibition of Autophagy by a Small Molecule through Covalent Modification of the LC3 Protein.
Angew.Chem.Int.Ed.Engl., 60, 2021
7SVA
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BU of 7sva by Molmil
Cryo-EM structure of Arabidopsis Ago10-guide RNA complex
Descriptor: MAGNESIUM ION, Protein argonaute 10, RNA (5'-R(P*UP*GP*GP*AP*GP*UP*GP*UP*GP*AP*CP*AP*AP*UP*GP*GP*UP*GP*UP*UP*U)-3')
Authors:Xiao, Y, MacRae, I.J.
Deposit date:2021-11-18
Release date:2022-11-23
Last modified:2023-07-05
Method:ELECTRON MICROSCOPY (3.26 Å)
Cite:Structural basis for RNA slicing by a plant Argonaute.
Nat.Struct.Mol.Biol., 30, 2023
7SWQ
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BU of 7swq by Molmil
Cryo-EM structure of Arabidopsis Ago10-guide-target RNA complex in a bent duplex conformation
Descriptor: MAGNESIUM ION, Protein argonaute 10, RNA (5'-R(P*CP*CP*AP*UP*UP*GP*UP*CP*AP*CP*AP*CP*UP*CP*CP*AP*AP*A)-3'), ...
Authors:Xiao, Y, MacRae, I.J.
Deposit date:2021-11-21
Release date:2022-11-23
Last modified:2023-07-05
Method:ELECTRON MICROSCOPY (3.79 Å)
Cite:Structural basis for RNA slicing by a plant Argonaute.
Nat.Struct.Mol.Biol., 30, 2023

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