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3NEZ
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BU of 3nez by Molmil
mRojoA
Descriptor: mRojoA
Authors:Mayo, S.L, Chica, R.A, Moore, M.M.
Deposit date:2010-06-09
Release date:2010-10-13
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Generation of longer emission wavelength red fluorescent proteins using computationally designed libraries.
Proc.Natl.Acad.Sci.USA, 107, 2010
3NF0
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BU of 3nf0 by Molmil
mPlum-TTN
Descriptor: D-MALATE, Fluorescent protein plum
Authors:Mayo, S.L, Chica, R.A, Moore, M.M.
Deposit date:2010-06-09
Release date:2010-10-13
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Structural Basis for Changes in the Fluorescent Properties of Computationally Designed Red Fluorescent Proteins
To be Published
3NED
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BU of 3ned by Molmil
mRouge
Descriptor: ACETATE ION, PAmCherry1 protein, SODIUM ION
Authors:Mayo, S.L, Chica, R.A, Moore, M.M.
Deposit date:2010-06-08
Release date:2010-11-24
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (0.95 Å)
Cite:Generation of longer emission wavelength red fluorescent proteins using computationally designed libraries.
Proc. Natl. Acad. Sci. U.S.A., 107, 2010
4QTR
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BU of 4qtr by Molmil
Computational design of co-assembling protein-DNA nanowires
Descriptor: DNA (5'-D(P*CP*GP*GP*AP*AP*AP*TP*TP*AP*AP*AP*TP*TP*AP*CP*A)-3'), DNA (5'-D(P*GP*TP*GP*TP*AP*AP*TP*TP*TP*AP*AP*TP*TP*TP*CP*C)-3'), dualENH
Authors:Mou, Y, Mayo, S.L.
Deposit date:2014-07-08
Release date:2015-07-29
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Computational design of co-assembling protein-DNA nanowires.
Nature, 525, 2015
4ZN8
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BU of 4zn8 by Molmil
Using molecular dynamics simulations to predict domain swapping of computationally designed protein variants
Descriptor: POTASSIUM ION, computationally modified engrailed homeodomain
Authors:Huang, P.-S, Thomas, L.M, Mayo, S.L.
Deposit date:2015-05-04
Release date:2015-05-27
Last modified:2019-11-27
Method:X-RAY DIFFRACTION (3 Å)
Cite:Using Molecular Dynamics Simulations as an Aid in the Prediction of Domain Swapping of Computationally Designed Protein Variants.
J.Mol.Biol., 427, 2015
1Y66
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BU of 1y66 by Molmil
Dioxane contributes to the altered conformation and oligomerization state of a designed engrailed homeodomain variant
Descriptor: 1,4-DIETHYLENE DIOXIDE, ACETIC ACID, CADMIUM ION, ...
Authors:Hom, G.K, Lassila, J.K, Thomas, L.M, Mayo, S.L.
Deposit date:2004-12-03
Release date:2005-03-15
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Dioxane contributes to the altered conformation and oligomerization state of a designed engrailed homeodomain variant.
Protein Sci., 14, 2005
3S3Z
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BU of 3s3z by Molmil
Crystal Structure an Tandem Cyanovirin-N Dimer, CVN2L10
Descriptor: SODIUM ION, Tandem Cyanovirin-N Dimer CVN2L10
Authors:Keeffe, J.R, Bjorkman, P.J, Mayo, S.L.
Deposit date:2011-05-18
Release date:2011-08-03
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Designed oligomers of cyanovirin-N show enhanced HIV neutralization.
Proc.Natl.Acad.Sci.USA, 108, 2011
3S3Y
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BU of 3s3y by Molmil
Crystal Structure an Tandem Cyanovirin-N Dimer, CVN2L0
Descriptor: SODIUM ION, TANDEM CYANOVIRIN-N DIMER CVN2L0
Authors:Keeffe, J.R, Bjorkman, P.J, Mayo, S.L.
Deposit date:2011-05-18
Release date:2011-08-03
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Designed oligomers of cyanovirin-N show enhanced HIV neutralization.
Proc.Natl.Acad.Sci.USA, 108, 2011
2MG4
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BU of 2mg4 by Molmil
Computational design and experimental verification of a symmetric protein homodimer
Descriptor: Computational designed homodimer
Authors:Mou, Y, Huang, P.S, Hsu, F.C, Huang, S.J, Mayo, S.L.
Deposit date:2013-10-26
Release date:2015-04-08
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Computational design and experimental verification of a symmetric protein homodimer.
Proc.Natl.Acad.Sci.USA, 112, 2015
2P6J
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BU of 2p6j by Molmil
Full-sequence computational design and solution structure of a thermostable protein variant
Descriptor: designed engrailed homeodomain variant UVF
Authors:Shah, P.S, Hom, G.K, Ross, S.A, Lassila, J.K, Crowhurst, K.A, Mayo, S.L.
Deposit date:2007-03-18
Release date:2007-08-14
Last modified:2022-03-16
Method:SOLUTION NMR
Cite:Full-sequence Computational Design and Solution Structure of a Thermostable Protein Variant.
J.Mol.Biol., 372, 2007
4NDK
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BU of 4ndk by Molmil
Crystal structure of a computational designed engrailed homeodomain variant fused with YFP
Descriptor: E23P-YFP, GFP-like fluorescent chromoprotein FP506, related, ...
Authors:Mou, Y, Mayo, S.L.
Deposit date:2013-10-26
Release date:2014-11-05
Last modified:2017-10-18
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Using Molecular Dynamics Simulations as an Aid in the Prediction of Domain Swapping of Computationally Designed Protein Variants.
J.Mol.Biol., 427, 2015
4NDJ
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BU of 4ndj by Molmil
Crystal Structure of a computational designed engrailed homeodomain variant fused with YFP
Descriptor: Green fluorescent protein, chimeric construct,GFP-like fluorescent chromoprotein FP506, related
Authors:Mou, Y, Mayo, S.L.
Deposit date:2013-10-26
Release date:2014-11-05
Last modified:2017-10-18
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Using Molecular Dynamics Simulations as an Aid in the Prediction of Domain Swapping of Computationally Designed Protein Variants.
J.Mol.Biol., 427, 2015
4NDL
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BU of 4ndl by Molmil
Computational design and experimental verification of a symmetric homodimer
Descriptor: ENH-c2b, computational designed homodimer
Authors:Mou, Y, Huang, P.S, Hsu, F.C, Huang, S.J, Mayo, S.L.
Deposit date:2013-10-26
Release date:2014-11-05
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Computational design and experimental verification of a symmetric protein homodimer.
Proc.Natl.Acad.Sci.USA, 112, 2015
4OHS
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BU of 4ohs by Molmil
The structure of a far-red fluorescent protein, AQ143
Descriptor: CHLORIDE ION, FAR-RED FLUORESCENT PROTEIN AQ143
Authors:Wannier, T.M, Mayo, S.L.
Deposit date:2014-01-17
Release date:2014-02-26
Last modified:2014-08-06
Method:X-RAY DIFFRACTION (2.19 Å)
Cite:The structure of a far-red fluorescent protein, AQ143, shows evidence in support of reported red-shifting chromophore interactions.
Protein Sci., 23, 2014
4PT6
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BU of 4pt6 by Molmil
The discobody: an engineered discoidin domain from factor VIII that binds v 3 integrin with antibody-like affinities
Descriptor: Coagulation factor VIII
Authors:Kym, G, Shi, K, Kamajaya, A, Hamdouche, S, Kostecki, J.S, Wannier, T, Li, B, Nikolovski, P, Mayo, S.L.
Deposit date:2014-03-10
Release date:2015-04-08
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:The discobody: an engineered discoidin domain from factor VIII that binds v 3 integrin with antibody-like affinities
To be Published
6DEJ
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BU of 6dej by Molmil
The structure of HcRed7, a brighter and red-shifted HcRed variant
Descriptor: CHLORIDE ION, DODECAETHYLENE GLYCOL, GFP-like non-fluorescent chromoprotein, ...
Authors:Wannier, T.M, Mayo, S.L.
Deposit date:2018-05-12
Release date:2018-05-23
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.6279 Å)
Cite:Monomerization of far-red fluorescent proteins.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
1EM7
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BU of 1em7 by Molmil
HELIX VARIANT OF THE B1 DOMAIN FROM STREPTOCOCCAL PROTEIN G
Descriptor: PROTEIN G
Authors:Strop, P, Marinescu, A.M, Mayo, S.L.
Deposit date:2000-03-16
Release date:2002-05-08
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure of a protein G helix variant suggests the importance of helix propensity and helix dipole interactions in protein design.
Protein Sci., 9, 2000
1FD6
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BU of 1fd6 by Molmil
DELTA0: A COMPUTATIONALLY DESIGNED CORE VARIANT OF THE B1 DOMAIN OF STREPTOCOCCAL PROTEIN G
Descriptor: IMMUNOGLOBULIN G BINDING PROTEIN G
Authors:Ross, S.A, Sarisky, C.A, Su, A, Mayo, S.L.
Deposit date:2000-07-19
Release date:2001-09-19
Last modified:2021-11-03
Method:SOLUTION NMR
Cite:Designed protein G core variants fold to native-like structures: sequence selection by ORBIT tolerates variation in backbone specification.
Protein Sci., 10, 2001
1FCL
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BU of 1fcl by Molmil
DELTA1.5: A COMPUTATIONALLY DESIGNED CORE VARIANT OF THE B1 DOMAIN OF STREPTOCOCCAL PROTEIN G
Descriptor: IMMUNOGLOBULIN G BINDING PROTEIN G
Authors:Ross, S.A, Sarisky, C.A, Su, A, Mayo, S.L.
Deposit date:2000-07-18
Release date:2001-09-19
Last modified:2021-11-03
Method:SOLUTION NMR
Cite:Designed protein G core variants fold to native-like structures: sequence selection by ORBIT tolerates variation in backbone specification.
Protein Sci., 10, 2001
1FSD
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BU of 1fsd by Molmil
FULL SEQUENCE DESIGN 1 (FSD-1) OF BETA BETA ALPHA MOTIF, NMR, 41 STRUCTURES
Descriptor: FULL SEQUENCE DESIGN 1 OF BETA BETA ALPHA MOTIF
Authors:Dahiyat, B.I, Mayo, S.L.
Deposit date:1997-06-09
Release date:1997-11-12
Last modified:2022-02-23
Method:SOLUTION NMR
Cite:De novo protein design: fully automated sequence selection.
Science, 278, 1997
1FME
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BU of 1fme by Molmil
SOLUTION STRUCTURE OF FSD-EY, A NOVEL PEPTIDE ASSUMING A BETA-BETA-ALPHA FOLD
Descriptor: FSD-EY PEPTIDE
Authors:Sarisky, C.A, Mayo, S.L.
Deposit date:2000-08-16
Release date:2001-04-21
Last modified:2022-02-23
Method:SOLUTION NMR
Cite:The beta-beta-alpha fold: explorations in sequence space.
J.Mol.Biol., 307, 2001
1FSV
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BU of 1fsv by Molmil
FULL SEQUENCE DESIGN 1 (FSD-1) OF BETA BETA ALPHA MOTIF, NMR, MINIMIZED AVERAGE STRUCTURE
Descriptor: FULL SEQUENCE DESIGN 1 OF BETA BETA ALPHA MOTIF
Authors:Dahiyat, B.I, Mayo, S.L.
Deposit date:1997-10-26
Release date:1998-01-28
Last modified:2022-02-23
Method:SOLUTION NMR
Cite:De novo protein design: fully automated sequence selection.
Science, 278, 1997
1GB4
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BU of 1gb4 by Molmil
HYPERTHERMOPHILIC VARIANT OF THE B1 DOMAIN FROM STREPTOCOCCAL PROTEIN G, NMR, 47 STRUCTURES
Descriptor: GB1-C3B4
Authors:Malakauskas, S.M, Mayo, S.L.
Deposit date:1998-01-19
Release date:1998-07-22
Last modified:2021-11-03
Method:SOLUTION NMR
Cite:Design, structure and stability of a hyperthermophilic protein variant.
Nat.Struct.Biol., 5, 1998
3O2L
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BU of 3o2l by Molmil
Crystal Structure of an Inactive Kemp Elimination Design HG-1
Descriptor: Endo-1,4-beta-xylanase
Authors:Thomas, L.M, Privett, H.K, Mayo, S.L.
Deposit date:2010-07-22
Release date:2011-07-20
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2 Å)
Cite:Iterative approach to computational enzyme design.
Proc.Natl.Acad.Sci.USA, 109, 2012
3NYZ
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BU of 3nyz by Molmil
Crystal Structure of Kemp Elimination Catalyst 1A53-2
Descriptor: Indole-3-glycerol phosphate synthase, SULFATE ION
Authors:Lee, T.M, Privett, H.K, Kaiser, J.T, Mayo, S.L.
Deposit date:2010-07-15
Release date:2011-06-29
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.514 Å)
Cite:Iterative approach to computational enzyme design.
Proc.Natl.Acad.Sci.USA, 109, 2012

 

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