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8BNA
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BU of 8bna by Molmil
BINDING OF HOECHST 33258 TO THE MINOR GROOVE OF B-DNA
Descriptor: 2'-(4-HYDROXYPHENYL)-5-(4-METHYL-1-PIPERAZINYL)-2,5'-BI-BENZIMIDAZOLE, DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'), MAGNESIUM ION
Authors:Pjura, P.E, Grzeskowiak, K, Dickerson, R.E.
Deposit date:1986-08-29
Release date:1987-01-15
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Binding of Hoechst 33258 to the minor groove of B-DNA.
J.Mol.Biol., 197, 1987
5BNA
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BU of 5bna by Molmil
THE PRIMARY MODE OF BINDING OF CISPLATIN TO A B-DNA DODECAMER: C-G-C-G-A-A-T-T-C-G-C-G
Descriptor: DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'), PLATINUM TRIAMINE ION
Authors:Wing, R.M, Pjura, P, Drew, H.R, Dickerson, R.E.
Deposit date:1983-08-22
Release date:1983-11-02
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:The primary mode of binding of cisplatin to a B-DNA dodecamer: C-G-C-G-A-A-T-T-C-G-C-G
EMBO J., 3, 1984
7BNA
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BU of 7bna by Molmil
ANISOTROPIC THERMAL-PARAMETER REFINEMENT OF THE DNA DODECAMER CGCGAATTCGCG BY THE SEGMENTED RIGID-BODY METHOD
Descriptor: DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3')
Authors:Holbrook, S.R, Dickerson, R.E, Kim, S.-H.
Deposit date:1985-01-07
Release date:1985-07-17
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Anisotropic Thermal-Parameter Refinement of the DNA Dodecamer CGCGAATTCGCG by the Segmented Rigid-Body Method
Acta Crystallogr.,Sect.B, 41, 1985
4BNA
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BU of 4bna by Molmil
REVERSIBLE BENDING AND HELIX GEOMETRY IN A B-DNA DODECAMER: CGCGAATTBRCGCG
Descriptor: DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*(CBR)P*GP*CP*G)-3')
Authors:Kopka, M.L, Fratini, A.V, Dickerson, R.E.
Deposit date:1982-02-16
Release date:1982-04-15
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Reversible bending and helix geometry in a B-DNA dodecamer: CGCGAATTBrCGCG.
J.Biol.Chem., 257, 1982
6BNA
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BU of 6bna by Molmil
BINDING OF AN ANTITUMOR DRUG TO DNA. NETROPSIN AND C-G-C-G-A-A-T-T-BRC-G-C-G
Descriptor: DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*(CBR)P*GP*CP*G)-3'), NETROPSIN
Authors:Kopka, M.L, Yoon, C, Goodsell, D, Pjura, P, Dickerson, R.E.
Deposit date:1984-08-30
Release date:1984-10-29
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.21 Å)
Cite:Binding of an antitumor drug to DNA, Netropsin and C-G-C-G-A-A-T-T-BrC-G-C-G.
J.Mol.Biol., 183, 1985
3BNA
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BU of 3bna by Molmil
REVERSIBLE BENDING AND HELIX GEOMETRY IN A B-DNA DODECAMER: CGCGAATTBRCGCG
Descriptor: DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*(CBR)P*GP*CP*G)-3')
Authors:Kopka, M.L, Fratini, A.V, Dickerson, R.E.
Deposit date:1982-02-16
Release date:1982-04-15
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (3 Å)
Cite:Reversible bending and helix geometry in a B-DNA dodecamer: CGCGAATTBrCGCG.
J.Biol.Chem., 257, 1982
451C
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BU of 451c by Molmil
STRUCTURE OF CYTOCHROME C551 FROM P. AERUGINOSA REFINED AT 1.6 ANGSTROMS RESOLUTION AND COMPARISON OF THE TWO REDOX FORMS
Descriptor: CYTOCHROME C551, PROTOPORPHYRIN IX CONTAINING FE
Authors:Matsuura, Y, Takano, T, Dickerson, R.E.
Deposit date:1981-07-20
Release date:1981-10-02
Last modified:2017-11-29
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structure of cytochrome c551 from Pseudomonas aeruginosa refined at 1.6 A resolution and comparison of the two redox forms.
J.Mol.Biol., 156, 1982
3FIS
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BU of 3fis by Molmil
THE MOLECULAR STRUCTURE OF WILD-TYPE AND A MUTANT FIS PROTEIN: RELATIONSHIP BETWEEN MUTATIONAL CHANGES AND RECOMBINATIONAL ENHANCER FUNCTION OR DNA BINDING
Descriptor: FACTOR FOR INVERSION STIMULATION (FIS)
Authors:Yuan, H.S, Finkel, S.E, Feng, J-A, Johnson, R.C, Dickerson, R.E.
Deposit date:1991-08-12
Release date:1993-10-31
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:The molecular structure of wild-type and a mutant Fis protein: relationship between mutational changes and recombinational enhancer function or DNA binding.
Proc.Natl.Acad.Sci.USA, 88, 1991
2BNA
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BU of 2bna by Molmil
STRUCTURE OF A B-DNA DODECAMER AT 16 KELVIN
Descriptor: DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3')
Authors:Drew, H.R, Samson, S, Dickerson, R.E.
Deposit date:1981-11-12
Release date:1982-02-03
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structure of a B-DNA dodecamer at 16 K.
Proc.Natl.Acad.Sci.USA, 79, 1982
5DNB
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BU of 5dnb by Molmil
STRUCTURE OF THE B-DNA DECAMER C-C-A-A-C-G-T-T-G-G AND COMPARISON WITH ISOMORPHOUS DECAMERS C-C-A-A-G-A-T-T-G-G AND C-C-A-G-G-C-C-T-G-G
Descriptor: DNA (5'-D(*CP*CP*AP*AP*CP*GP*TP*TP*GP*G)-3'), MAGNESIUM ION
Authors:Prive, G.G, Yanagi, K, Dickerson, R.E.
Deposit date:1990-03-22
Release date:1991-10-15
Last modified:2023-07-26
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Structure of the B-DNA decamer C-C-A-A-C-G-T-T-G-G and comparison with isomorphous decamers C-C-A-A-G-A-T-T-G-G and C-C-A-G-G-C-C-T-G-G.
J.Mol.Biol., 217, 1991
351C
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BU of 351c by Molmil
STRUCTURE OF CYTOCHROME C551 FROM P. AERUGINOSA REFINED AT 1.6 ANGSTROMS RESOLUTION AND COMPARISON OF THE TWO REDOX FORMS
Descriptor: CYTOCHROME C551, PROTOPORPHYRIN IX CONTAINING FE
Authors:Matsuura, Y, Takano, T, Dickerson, R.E.
Deposit date:1981-07-20
Release date:1981-10-02
Last modified:2017-11-29
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structure of cytochrome c551 from Pseudomonas aeruginosa refined at 1.6 A resolution and comparison of the two redox forms.
J.Mol.Biol., 156, 1982
3DNB
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BU of 3dnb by Molmil
HELIX GEOMETRY, HYDRATION, AND G.A MISMATCH IN A B-DNA DECAMER
Descriptor: DNA (5'-D(*CP*CP*AP*AP*GP*AP*TP*TP*GP*G)-3'), MAGNESIUM ION
Authors:Prive, G.G, Dickerson, R.E.
Deposit date:1988-03-18
Release date:1989-01-09
Last modified:2023-07-26
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Structure of the B-DNA decamer C-C-A-A-C-G-T-T-G-G and comparison with isomorphous decamers C-C-A-A-G-A-T-T-G-G and C-C-A-G-G-C-C-T-G-G.
J.Mol.Biol., 217, 1991
1SK5
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BU of 1sk5 by Molmil
The ultra-high resolution structure of d(CTTTTAAAAG)2: modulation of bending by T-A steps and its role in DNA recognition
Descriptor: 5'-D(*CP*TP*TP*TP*TP*AP*AP*AP*AP*G)-3', CALCIUM ION
Authors:Han, G.W, Langs, D, Kopka, M.L, Dickerson, R.E.
Deposit date:2004-03-04
Release date:2005-06-21
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (0.89 Å)
Cite:The ultra-high resolution structure of d(CTTTTAAAAG)2: modulation of bending by T-A steps and its role in DNA recognition
To be Published
1ZG5
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BU of 1zg5 by Molmil
NarL complexed to narG-89 promoter palindromic tail-to-tail DNA site
Descriptor: 5'-D(*CP*GP*TP*AP*CP*CP*CP*CP*TP*AP*TP*AP*GP*GP*GP*GP*TP*AP*CP*G)-3', Nitrate/nitrite response regulator protein narL, SULFATE ION
Authors:Maris, A.E, Kaczor-Grzeskowiak, M, Ma, Z, Kopka, M.L, Gunsalus, R.P, Dickerson, R.E.
Deposit date:2005-04-20
Release date:2005-11-22
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Primary and Secondary Modes of DNA Recognition by the NarL Two-Component Response Regulator.
Biochemistry, 44, 2005
1ZG1
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BU of 1zg1 by Molmil
NarL complexed to nirB promoter non-palindromic tail-to-tail DNA site
Descriptor: 5'-D(*CP*GP*TP*AP*CP*CP*CP*AP*TP*TP*AP*AP*GP*GP*AP*GP*TP*AP*CP*G)-3', 5'-D(*CP*GP*TP*AP*CP*TP*CP*CP*TP*TP*AP*AP*TP*GP*GP*GP*TP*AP*CP*G)-3', Nitrate/nitrite response regulator protein narL, ...
Authors:Maris, A.E, Kaczor-Grzeskowiak, M, Ma, Z, Kopka, M.L, Gunsalus, R.P, Dickerson, R.E.
Deposit date:2005-04-20
Release date:2005-11-22
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Primary and Secondary Modes of DNA Recognition by the NarL Two-Component Response Regulator.
Biochemistry, 44, 2005
455D
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BU of 455d by Molmil
A6/A18 INTER-STRAND DITHIOBIS(PROPANE)-CROSSLINKED DODECAMER (CGCGAATTCGCG)2
Descriptor: DITHIOBIS-(PROPANE), DNA (5'-D(*CP*GP*CP*GP*AP*(SSP)AP*TP*TP*CP*GP*CP*G)-3'), MAGNESIUM ION
Authors:Chiu, T.K, Kaczor-Grzeskowiak, M, Dickerson, R.E.
Deposit date:1999-03-04
Release date:1999-10-08
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.43 Å)
Cite:Absence of minor groove monovalent cations in the crosslinked dodecamer C-G-C-G-A-A-T-T-C-G-C-G.
J.Mol.Biol., 292, 1999
4FIS
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BU of 4fis by Molmil
THE MOLECULAR STRUCTURE OF WILD-TYPE AND A MUTANT FIS PROTEIN: RELATIONSHIP BETWEEN MUTATIONAL CHANGES AND RECOMBINATIONAL ENHANCER FUNCTION OR DNA BINDING
Descriptor: FACTOR FOR INVERSION STIMULATION (FIS)
Authors:Yuan, H.S, Finkel, S.E, Feng, J.-A, Johnson, R.C, Dickerson, R.E.
Deposit date:1991-08-12
Release date:1993-10-31
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:The molecular structure of wild-type and a mutant Fis protein: relationship between mutational changes and recombinational enhancer function or DNA binding.
Proc.Natl.Acad.Sci.USA, 88, 1991
1PJG
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BU of 1pjg by Molmil
RNA/DNA Hybrid Decamer of CAAAGAAAAG/CTTTTCTTTG
Descriptor: 5'-D(*CP*TP*TP*TP*TP*CP*TP*TP*TP*G)-3', 5'-R(*CP*AP*AP*AP*GP*AP*AP*AP*AP*G)-3', CALCIUM ION
Authors:Kopka, M.L, Lavelle, L, Han, G.W, Ng, H.-L, Dickerson, R.E.
Deposit date:2003-06-02
Release date:2003-12-09
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.15 Å)
Cite:An unusual sugar conformation in the structure of an RNA/DNA decamer of the polypurine tract may affect recognition by RNase H.
J.Mol.Biol., 334, 2003
1PJO
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BU of 1pjo by Molmil
Crystal Structure of an RNA/DNA hybrid of HIV-1 PPT
Descriptor: 5'-D(*CP*TP*TP*TP*TP*CP*TP*TP*TP*G)-3', 5'-R(*CP*AP*AP*AP*GP*AP*AP*AP*AP*G)-3', MAGNESIUM ION
Authors:Kopka, M.L, Lavelle, L, Han, G.W, Ng, H.-L, Dickerson, R.E.
Deposit date:2003-06-03
Release date:2003-12-09
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:An Unusual Sugar Conformation in the Structure of an RNA/DNA Decamer of the Polypurine Tract May Affect Recognition by RNase H
J.Mol.Biol., 334, 2003
1ZNA
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BU of 1zna by Molmil
CONFORMATION AND DYNAMICS IN A Z-DNA TETRAMER
Descriptor: DNA (5'-D(*CP*GP*CP*G)-3')
Authors:Drew, H.R, Dickerson, R.E.
Deposit date:1981-01-26
Release date:1981-03-18
Last modified:2023-07-26
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Conformation and dynamics in a Z-DNA tetramer.
J.Mol.Biol., 152, 1981
334D
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BU of 334d by Molmil
DEFINING GC-SPECIFICITY IN THE MINOR GROOVE: SIDE-BY-SIDE BINDING OF THE DI-IMIDAZOLE LEXITROPSIN TO C-A-T-G-G-C-C-A-T-G
Descriptor: CALCIUM ION, DIIMIDAZOLE LEXITROPSIN, DNA (5'-D(*CP*AP*TP*GP*GP*CP*CP*AP*TP*G)-3')
Authors:Kopka, M.L, Goodsell, D.S, Dickerson, R.E.
Deposit date:1997-05-22
Release date:1997-08-29
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Defining GC-specificity in the minor groove: side-by-side binding of the di-imidazole lexitropsin to C-A-T-G-G-C-C-A-T-G.
Structure, 5, 1997
307D
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BU of 307d by Molmil
Structure of a DNA analog of the primer for HIV-1 RT second strand synthesis
Descriptor: DNA (5'-D(*CP*AP*AP*AP*GP*AP*AP*AP*AP*G)-3'), DNA (5'-D(*CP*TP*TP*TP*TP*CP*TP*TP*TP*G)-3')
Authors:Han, G.W, Kopka, M.L, Cascio, D, Grzeskowiak, K, Dickerson, R.E.
Deposit date:1997-01-07
Release date:1997-01-27
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Structure of a DNA analog of the primer for HIV-1 RT second strand synthesis.
J.Mol.Biol., 269, 1997
1BNA
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BU of 1bna by Molmil
STRUCTURE OF A B-DNA DODECAMER. CONFORMATION AND DYNAMICS
Descriptor: DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3')
Authors:Drew, H.R, Wing, R.M, Takano, T, Broka, C, Tanaka, S, Itakura, K, Dickerson, R.E.
Deposit date:1981-01-26
Release date:1981-05-21
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure of a B-DNA dodecamer: conformation and dynamics.
Proc.Natl.Acad.Sci.USA, 78, 1981
1RNL
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BU of 1rnl by Molmil
THE NITRATE/NITRITE RESPONSE REGULATOR PROTEIN NARL FROM NARL
Descriptor: GLYCEROL, NITRATE/NITRITE RESPONSE REGULATOR PROTEIN NARL, PLATINUM (II) ION
Authors:Baikalov, I, Schroder, I, Kaczor-Grzeskowiak, M, Grzeskowiak, K, Gunsalus, R.P, Dickerson, R.E.
Deposit date:1996-04-17
Release date:1996-11-08
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structure of the Escherichia coli response regulator NarL.
Biochemistry, 35, 1996
1HCR
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BU of 1hcr by Molmil
HIN RECOMBINASE BOUND TO DNA: THE ORIGIN OF SPECIFICITY IN MAJOR AND MINOR GROOVE INTERACTIONS
Descriptor: DNA (5'-D(*TP*CP*TP*TP*AP*TP*CP*AP*AP*AP*AP*AP*C)-3'), DNA (5'-D(*TP*GP*TP*TP*TP*TP*TP*GP*AP*TP*AP*AP*GP*A)-3'), PROTEIN (HIN RECOMBINASE)
Authors:Feng, J.-A, Johnson, R.C, Dickerson, R.E.
Deposit date:1993-12-17
Release date:1994-04-30
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Hin recombinase bound to DNA: the origin of specificity in major and minor groove interactions.
Science, 263, 1994

 

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